GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gabD (succinate semialdehyde dehydrogenase) in L-arginine catabolism

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Definition of gabD

Fetched 37 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 34 of these sequences

Found 1 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 450-547 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

B0JFD4 succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Lucilia cuprina
PFams: Aldedh
507 amino acids: PaperBLAST, CDD, Compare to cluster

A0A0J9X1M8 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) from Streptococcus pyogenes
PFams: Aldedh
465 amino acids: PaperBLAST, CDD, Compare to cluster

B1XMM6 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) from Synechococcus sp.
PFams: Aldedh
454 amino acids: PaperBLAST, CDD, Compare to cluster

b1300 γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (EC 1.2.1.19; EC 1.2.1.24; EC 1.2.1.99) from Escherichia coli K-12 substr. MG1655
PUUC_ECOLI / P23883 NADP/NAD-dependent aldehyde dehydrogenase PuuC; ALDH; 3-hydroxypropionaldehyde dehydrogenase; Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Gamma-Glu-gamma-aminobutyraldehyde dehydrogenase; EC 1.2.1.5 from Escherichia coli (strain K12)
P23883 4-(gamma-glutamylamino)butanal dehydrogenase (EC 1.2.1.99) from Escherichia coli
P23883 γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (EC 1.2.1.19; EC 1.2.1.24; EC 1.2.1.99) from Escherichia coli (strain K12)
PFams: Aldedh
495 amino acids: PaperBLAST, CDD, Compare to cluster

b2661 succinate-semialdehyde dehydrogenase (NADP+) GabD (EC 1.2.1.79) from Escherichia coli K-12 substr. MG1655
GABD_ECOLI / P25526 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD; SSDH; Glutarate-semialdehyde dehydrogenase; EC 1.2.1.79; EC 1.2.1.- from Escherichia coli (strain K12)
P25526 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) from Escherichia coli K-12
P25526 succinate-semialdehyde dehydrogenase (NADP+) GabD (EC 1.2.1.79) from Escherichia coli (strain K12)
GB|AAC75708.1 succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli K12
PFams: Aldedh
482 amino acids: PaperBLAST, CDD, Compare to cluster

SSDH_HUMAN / P51649 Succinate-semialdehyde dehydrogenase, mitochondrial; Aldehyde dehydrogenase family 5 member A1; NAD(+)-dependent succinic semialdehyde dehydrogenase; EC 1.2.1.24 from Homo sapiens (Human)
P51649 succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Homo sapiens
P51649 Succinate-semialdehyde dehydrogenase, mitochondrial (EC 1.2.1.24) from Homo sapiens
PFams: Aldedh
535 amino acids: PaperBLAST, CDD, Compare to cluster

Q0K2K1 succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1 NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
PFams: Aldedh
483 amino acids: PaperBLAST, CDD, Compare to cluster

Q3MSM3 succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Hylobates lar
PFams: Aldedh
535 amino acids: PaperBLAST, CDD, Compare to cluster

Q3MSM4 succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Pan paniscus
PFams: Aldedh
535 amino acids: PaperBLAST, CDD, Compare to cluster

Q6A2H0 succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Pan troglodytes
PFams: Aldedh
535 amino acids: PaperBLAST, CDD, Compare to cluster

Q6A2H1 succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Gorilla gorilla
PFams: Aldedh
535 amino acids: PaperBLAST, CDD, Compare to cluster

Q6A2H2 succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Pongo pygmaeus pygmaeus
PFams: Aldedh
535 amino acids: PaperBLAST, CDD, Compare to cluster

Q8ZPI3 succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: Aldedh
462 amino acids: PaperBLAST, CDD, Compare to cluster

Q976X5 succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); aldehyde dehydrogenase [NAD(P)+] (EC 1.2.1.5) from Sulfurisphaera tokodaii
PFams: Aldedh
468 amino acids: PaperBLAST, CDD, Compare to cluster

Q97XA5 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79); glyceraldehyde-3-phosphate dehydrogenase (NADP+) (EC 1.2.1.9) from Saccharolobus solfataricus
PFams: Aldedh
470 amino acids: PaperBLAST, CDD, Compare to cluster

Q97XS9 succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24); glyceraldehyde-3-phosphate dehydrogenase (NADP+) (EC 1.2.1.9) from Saccharolobus solfataricus
PFams: Aldedh
470 amino acids: PaperBLAST, CDD, Compare to cluster

Q9VBP6 succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Drosophila melanogaster
PFams: Aldedh, DUF1487
509 amino acids: PaperBLAST, CDD, Compare to cluster

b1525 succinate semialdehyde dehydrogenase (NAD(P)+) Sad (EC 1.2.1.24) from Escherichia coli K-12 substr. MG1655
SAD_ECOLI / P76149 Succinate semialdehyde dehydrogenase [NAD(P)+] Sad; SSADH; SSDH; EC 1.2.1.16 from Escherichia coli (strain K12)
P76149 succinate semialdehyde dehydrogenase (NAD(P)+) Sad (EC 1.2.1.24) from Escherichia coli (strain K12)
RF|NP_416042 aldehyde dehydrogenase-like protein yneI from Escherichia coli K12
PFams: Aldedh
462 amino acids: PaperBLAST, CDD, Compare to cluster

GABD_BACSU / P94428 Succinate-semialdehyde dehydrogenase [NADP(+)]; SSDH; EC 1.2.1.79 from Bacillus subtilis (strain 168)
P94428 succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis
PFams: Aldedh
462 amino acids: PaperBLAST, CDD, Compare to cluster

GABD2_MYCTU / P9WNX7 Putative succinate-semialdehyde dehydrogenase [NADP(+)] 2; SSADH 2; SSDH 2; EC 1.2.1.79 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
PFams: Aldedh
518 amino acids: PaperBLAST, CDD, Compare to cluster

GABD1_MYCTU / P9WNX9 Succinate-semialdehyde dehydrogenase [NADP(+)] 1; SSADH 1; SSDH 1; EC 1.2.1.79 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WNX9 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) from Mycobacterium tuberculosis
P9WNX9 NADP-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.79) from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
PFams: Aldedh
457 amino acids: PaperBLAST, CDD, Compare to cluster

KGSD1_AZOBR / Q1JUP4 Alpha-ketoglutaric semialdehyde dehydrogenase 1; alphaKGSA dehydrogenase 1; 2,5-dioxovalerate dehydrogenase 1; 2-oxoglutarate semialdehyde dehydrogenase 1; KGSADH-I; Succinate-semialdehyde dehydrogenase [NAD(+)]; SSDH; EC 1.2.1.26; EC 1.2.1.24 from Azospirillum brasilense
Q1JUP4 succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24); 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Azospirillum brasilense
PFams: Aldedh
481 amino acids: PaperBLAST, CDD, Compare to cluster

TGNE_ACIAD / Q6F9G0 Succinate semialdehyde dehydrogenase; SSA dehydrogenase; EC 1.2.1.24 from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
PFams: Aldedh
483 amino acids: PaperBLAST, CDD, Compare to cluster

SSDH_PAENI / Q8GAI8 Succinate-semialdehyde dehydrogenase; SsaDH; EC 1.2.1.16 from Paenarthrobacter nicotinovorans (Arthrobacter nicotinovorans)
PFams: Aldedh
450 amino acids: PaperBLAST, CDD, Compare to cluster

ALDH_PAENI / Q8GAK7 Aldehyde dehydrogenase; NAD/NADP-dependent aldehyde dehydrogenase; EC 1.2.1.3; EC 1.2.1.4 from Paenarthrobacter nicotinovorans (Arthrobacter nicotinovorans)
Q8GAK7 succinate-semialdehyde dehydrogenase (NADP+) monomer (EC 1.2.1.79) from Paenarthrobacter nicotinovorans
PFams: Aldedh
458 amino acids: PaperBLAST, CDD, Compare to cluster

SSDH_ARATH / Q9SAK4 Succinate-semialdehyde dehydrogenase, mitochondrial; At-SSADH1; Aldehyde dehydrogenase family 5 member F1; NAD(+)-dependent succinic semialdehyde dehydrogenase; Protein ENLARGED FIL EXPRESSING DOMAIN 1; EC 1.2.1.24 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Aldedh
528 amino acids: PaperBLAST, CDD, Compare to cluster

SSDH1_SCHPO / Q9US47 Putative succinate-semialdehyde dehydrogenase C1002.12c [NADP(+)]; SSDH; EC 1.2.1.16 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
PFams: Aldedh
547 amino acids: PaperBLAST, CDD, Compare to cluster

SSDH2_SCHPO / Q9UTM8 Putative succinate-semialdehyde dehydrogenase C139.05 [NADP(+)]; SSDH; EC 1.2.1.16 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
PFams: Aldedh
493 amino acids: PaperBLAST, CDD, Compare to cluster

Q9RBF6 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) from Cupriavidus necator
Q9RBF6 NADP-dependent succinate semialdehyde dehydrogenase (EC 1.2.1.79) from Cupriavidus necator
PFams: Aldedh
483 amino acids: PaperBLAST, CDD, Compare to cluster

Q4KKA2 NAD(P)-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
PFams: Aldedh
480 amino acids: PaperBLAST, CDD, Compare to cluster

A0A222FYW4 succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Alicycliphilus sp.
PFams: Aldedh
480 amino acids: PaperBLAST, CDD, Compare to cluster

P38067 NAD(P)-dependent succinate semialdehyde dehydrogenase (EC 1.2.1.16) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
PFams: Aldedh
497 amino acids: PaperBLAST, CDD, Compare to cluster

SO1275 succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16] from Shewanella oneidensis MR-1
PFams: Aldedh
482 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_11505 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens FW300-N2E3
PFams: Aldedh
480 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/3 heteromeric)

A2R4V5 succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Aspergillus niger
PFams: Aldedh
650 amino acids: PaperBLAST, CDD

P38947 succinate semialdehyde dehydrogenase subunit (EC 1.2.1.76) from Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
GB|AAA92347.1 succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Clostridium kluyveri DSM 555
PFams: Aldedh
453 amino acids: PaperBLAST, CDD

B1Q3F6 NAD-dependent succinate semialdehyde dehydrogenase (EC 1.2.1.24) from Solanum lycopersicum
PFams: NAD_binding_2, ApbA, F420_oxidored, NAD_binding_11
287 amino acids: PaperBLAST, CDD