GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gabT (gamma-aminobutyrate transaminase) in L-arginine catabolism

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Definition of gabT

Fetched 32 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 32 of these sequences

Found 3 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 421-520 amino acids (not heteromeric)

Sama_2643 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Shewanella amazonensis SB2B
PFams: Aminotran_3
460 amino acids: PaperBLAST, CDD, Compare to cluster

Q7XN12 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa
PFams: Aminotran_3
497 amino acids: PaperBLAST, CDD, Compare to cluster

DAVT_PSEPK / Q88RB9 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 (from HMM only) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Q88RB9 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida
PFams: Aminotran_3, Aminotran_1_2
425 amino acids: PaperBLAST, CDD, Compare to cluster

GATP_ARATH / Q94CE5 Gamma-aminobutyrate transaminase POP2, mitochondrial; AtGABA-T; Gamma-aminobutyric acid aminotransferase 1; Protein HEXENAL RESPONSE 1; Protein POLLEN-PISTIL INCOMPATIBILITY 2; AtPOP2; EC 2.6.1.96 from Arabidopsis thaliana (Mouse-ear cress)
Q94CE5 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Arabidopsis thaliana
Q94CE5 γ-aminobutyrate transaminase (pyruvate dependent) (EC 2.6.1.96) from Arabidopsis thaliana
PFams: Aminotran_3
504 amino acids: PaperBLAST, CDD, Compare to cluster

DAVT_PSEAE / Q9I6M4 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6M4 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4 5-aminovalerate aminotransferase (EC 2.6.1.48) (from HMM only) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
426 amino acids: PaperBLAST, CDD, Compare to cluster

b1302 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli K-12 substr. MG1655
PUUE_ECOLI / P50457 4-aminobutyrate aminotransferase PuuE; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; EC 2.6.1.19 from Escherichia coli (strain K12)
P50457 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli (strain K12)
PFams: Aminotran_3, Aminotran_1_2
421 amino acids: PaperBLAST, CDD, Compare to cluster

GATP4_ORYSJ / Q6ZH29 Probable gamma-aminobutyrate transaminase 4; OsGABA-T; EC 2.6.1.96 from Oryza sativa subsp. japonica (Rice)
Q6ZH29 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa
PFams: Aminotran_3
483 amino acids: PaperBLAST, CDD, Compare to cluster

GATP1_ORYSJ / Q7XN11 Gamma-aminobutyrate transaminase 1, mitochondrial; EC 2.6.1.96 from Oryza sativa subsp. japonica (Rice)
Q7XN11 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa
PFams: Aminotran_3
516 amino acids: PaperBLAST, CDD, Compare to cluster

GATP3_SOLLC / Q84P52 Gamma aminobutyrate transaminase 3, chloroplastic; Gamma-aminobutyrate transaminase isozyme 3; LeGABA-TP3; SlGABA-T3; EC 2.6.1.96 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Q84P52 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum
PFams: Aminotran_3
520 amino acids: PaperBLAST, CDD, Compare to cluster

GATP2_SOLLC / Q84P53 Gamma aminobutyrate transaminase 2; Gamma-aminobutyrate transaminase isozyme 2; LeGABA-TP2; SlGABA-T2; EC 2.6.1.96 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Q84P53 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P53 gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
PFams: Aminotran_3
458 amino acids: PaperBLAST, CDD, Compare to cluster

GATP1_SOLLC / Q84P54 Gamma aminobutyrate transaminase 1, mitochondrial; Gamma-aminobutyrate transaminase isozyme 1; LeGABA-TP1; SlGABA-T1; EC 2.6.1.96 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Q84P54 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P54 gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
PFams: Aminotran_3
515 amino acids: PaperBLAST, CDD, Compare to cluster

Q4KKA1 4-aminobutyrate transaminase subunit (EC 2.6.1.19) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
PFams: Aminotran_3, Aminotran_1_2
425 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS23155 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Burkholderia phytofirmans PsJN
PFams: Aminotran_3
482 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_27130 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas simiae WCS417
PFams: Aminotran_3
454 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_08585 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens FW300-N2E3
PFams: Aminotran_3
454 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_13150 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens FW300-N2C3
PFams: Aminotran_3
454 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_4512 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens FW300-N2E2
PFams: Aminotran_3
454 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 471-509 amino acids (not heteromeric)

A5H0J5 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); alanine transaminase (EC 2.6.1.2) from Lachancea kluyveri
PFams: Aminotran_3
475 amino acids: PaperBLAST, CDD, Compare to cluster

A5H0J6 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Lachancea kluyveri
PFams: Aminotran_3
471 amino acids: PaperBLAST, CDD, Compare to cluster

GABAT_YEAST / P17649 4-aminobutyrate aminotransferase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; EC 2.6.1.19 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
P17649 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Saccharomyces cerevisiae
P17649 4-aminobutyrate aminotransferase (EC 2.6.1.19) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
PFams: Aminotran_3
471 amino acids: PaperBLAST, CDD, Compare to cluster

P61922 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Mus musculus
PFams: Aminotran_3
500 amino acids: PaperBLAST, CDD, Compare to cluster

GABT_HUMAN / P80404 4-aminobutyrate aminotransferase, mitochondrial; (S)-3-amino-2-methylpropionate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; GABA-T; L-AIBAT; EC 2.6.1.19; EC 2.6.1.22 from Homo sapiens (Human)
P80404 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Homo sapiens
P80404 4-aminobutyrate aminotransferase, mitochondrial (EC 2.6.1.19; EC 2.6.1.22) from Homo sapiens
PFams: Aminotran_3
500 amino acids: PaperBLAST, CDD, Compare to cluster

GI|2346 4-aminobutyrate aminotransferase; EC 2.6.1.19 from Emericella nidulans
PFams: Aminotran_3
498 amino acids: PaperBLAST, CDD, Compare to cluster

GABAT_SCHPO / O13837 4-aminobutyrate aminotransferase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; EC 2.6.1.19 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
O13837 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Schizosaccharomyces pombe
RF|NP_594905.1 4-aminobutyrate aminotransferase (GABA transaminase); EC 2.6.1.19 from Schizosaccharomyces pombe
PFams: Aminotran_3
474 amino acids: PaperBLAST, CDD, Compare to cluster

GABAT_USTMA / P49604 4-aminobutyrate aminotransferase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; EC 2.6.1.19 from Ustilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)
PFams: Aminotran_3
509 amino acids: PaperBLAST, CDD, Compare to cluster

GABT_PIG / P80147 4-aminobutyrate aminotransferase, mitochondrial; (S)-3-amino-2-methylpropionate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; GABA-T; L-AIBAT; EC 2.6.1.19; EC 2.6.1.22 from Sus scrofa (Pig)
P80147 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Sus scrofa
PFams: Aminotran_3
500 amino acids: PaperBLAST, CDD, Compare to cluster

GABAT_KLULA / Q6CJ86 4-aminobutyrate aminotransferase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; EC 2.6.1.19 from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast) (Candida sphaerica)
PFams: Aminotran_3
472 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 423-426 amino acids (not heteromeric)

A1S8Y2 4-aminobutyrate aminotransferase; EC=2.6.1.19
425 amino acids: PaperBLAST, CDD, Compare to cluster

Q0K2K2 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Cupriavidus necator
Q0K2K2 4-aminobutyrate aminotransferase monomer (EC 2.6.1.19) from Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
PFams: Aminotran_3
423 amino acids: PaperBLAST, CDD, Compare to cluster

b2662 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli K-12 substr. MG1655
GABT_ECOLI / P22256 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli (strain K12)
P22256 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli (strain K12)
PFams: Aminotran_3
426 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_11510 5-aminovalerate transaminase (EC 2.6.1.48) (from HMM only) from Pseudomonas fluorescens FW300-N2E3
PFams: Aminotran_3
425 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_4013 5-aminovalerate transaminase (EC 2.6.1.48) (from HMM only) from Pseudomonas fluorescens FW300-N2E2
PFams: Aminotran_3, Aminotran_1_2
425 amino acids: PaperBLAST, CDD, Compare to cluster