GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gbamidase (guanidinobutyramidase) in L-arginine catabolism

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Definition of gbamidase

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 265-267 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A0A088BHP3 aryl-acylamidase (EC 3.5.1.13); amidase (EC 3.5.1.4) from Streptomyces sp.
PFams: CN_hydrolase
267 amino acids: PaperBLAST, CDD, Compare to cluster

A0A291T0X0 4-guanidinobutyramide hydrolase; SubName: Full=Carbon-nitrogen hydrolase
265 amino acids: PaperBLAST, CDD, Compare to cluster

A0A291T3M3 Putative 4-guanidinobutyryl amide hydrolase
267 amino acids: PaperBLAST, CDD, Compare to cluster