GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for ocd (ornithine cyclodeaminase) in L-arginine catabolism

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Definition of ocd

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 341-356 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

OCD_PSEPK / Q88H32 Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Q88H32 ornithine cyclodeaminase (EC 4.3.1.12) from Pseudomonas putida
PFams: OCD_Mu_crystall
350 amino acids: PaperBLAST, CDD, Compare to cluster

OCD_AGRFC / P09773 Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))
P09773 ornithine cyclodeaminase (EC 4.3.1.12) from Agrobacterium fabrum (strain C58 / ATCC 33970)
PFams: OCD_Mu_crystall
354 amino acids: PaperBLAST, CDD, Compare to cluster

OCD_AGRT4 / Q59701 Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium tumefaciens (strain Ach5)
PFams: OCD_Mu_crystall
356 amino acids: PaperBLAST, CDD, Compare to cluster

J7SH14 ornithine cyclodeaminase subunit (EC 4.3.1.12) from Clostridium sporogenes (strain ATCC 15579)
PFams: OCD_Mu_crystall
341 amino acids: PaperBLAST, CDD, Compare to cluster