GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to odc

Finding the characterized proteins for odc (L-ornithine decarboxylase) in L-arginine catabolism

Or see clustering for step odc

Or see all steps for L-arginine catabolism

Or cluster curated proteins matching a keyword

Definition of odc

Fetched 32 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 7 other characterized sequences. (Found 39 hits including self hits.)

There are also 1 HMM-only high-coverage hits.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for odc.)

AZIN2_XENLA / Q9I8S4 Antizyme inhibitor 2; AzI2; Ornithine decarboxylase 2; ODC 2; xODC2; Ornithine decarboxylase-like protein; ODC-like protein; ornithine decarboxylase paralog; ODC-p from Xenopus laevis (African clawed frog)
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
456 amino acids: PaperBLAST, CDD, SwissProt::Q9I8S4
66% identical to

DCOR_HUMAN / P11926 Ornithine decarboxylase; ODC; EC 4.1.1.17 from Homo sapiens (Human)
P11926 ornithine decarboxylase (EC 4.1.1.17) from Homo sapiens
P11926 ornithine decarboxylase subunit (EC 4.1.1.17) from Homo sapiens
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
461 amino acids: PaperBLAST, CDD

AZIN1_HUMAN / O14977 Antizyme inhibitor 1; AZI; AZI1; Ornithine decarboxylase antizyme inhibitor from Homo sapiens (Human)
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
448 amino acids: PaperBLAST, CDD, SwissProt::O14977
50% identical to

DCOR_MOUSE / P00860 Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus (Mouse)
P00860 ornithine decarboxylase (EC 4.1.1.17) from Mus musculus
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
461 amino acids: PaperBLAST, CDD

AZIN2_HUMAN / Q96A70 Antizyme inhibitor 2; AzI2; Arginine decarboxylase; ADC; ARGDC; Ornithine decarboxylase-like protein; ODC-like protein; ornithine decarboxylase paralog; ODC-p from Homo sapiens (Human)
Q96A70 arginine decarboxylase (EC 4.1.1.19) from Homo sapiens
Q96A70 arginine decarboxylase (EC 4.1.1.19) from Homo sapiens
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
460 amino acids: PaperBLAST, CDD, SwissProt::Q96A70
52% identical to

DCOR_HUMAN / P11926 Ornithine decarboxylase; ODC; EC 4.1.1.17 from Homo sapiens (Human)
P11926 ornithine decarboxylase (EC 4.1.1.17) from Homo sapiens
P11926 ornithine decarboxylase subunit (EC 4.1.1.17) from Homo sapiens
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
461 amino acids: PaperBLAST, CDD

AZIN2_MOUSE / Q8BVM4 Antizyme inhibitor 2; AzI2; Arginine decarboxylase-like protein; ADC; ARGDC; Ornithine decarboxylase-like protein; ODC-like protein; ornithine decarboxylase paralog; ODC-p from Mus musculus (Mouse)
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
459 amino acids: PaperBLAST, CDD, SwissProt::Q8BVM4
50% identical to

DCOR1_XENLA / P27120 Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis (African clawed frog)
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
460 amino acids: PaperBLAST, CDD

AZIN1_MOUSE / O35484 Antizyme inhibitor 1; AZI; Ornithine decarboxylase antizyme inhibitor from Mus musculus (Mouse)
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
448 amino acids: PaperBLAST, CDD, SwissProt::O35484
50% identical to

DCOR_MOUSE / P00860 Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus (Mouse)
P00860 ornithine decarboxylase (EC 4.1.1.17) from Mus musculus
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
461 amino acids: PaperBLAST, CDD

AZIN1_RAT / Q63764 Antizyme inhibitor 1; AZI; Ornithine decarboxylase antizyme inhibitor from Rattus norvegicus (Rat)
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
448 amino acids: PaperBLAST, CDD, SwissProt::Q63764
49% identical to

DCOR_MOUSE / P00860 Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus (Mouse)
P00860 ornithine decarboxylase (EC 4.1.1.17) from Mus musculus
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
461 amino acids: PaperBLAST, CDD

AZIN2_RAT / D4A693 Antizyme inhibitor 2; AzI2; Ornithine decarboxylase-like protein; ODC-like protein; ornithine decarboxylase paralog; ODC-p from Rattus norvegicus (Rat)
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
457 amino acids: PaperBLAST, CDD, SwissProt::D4A693
42% identical to

DCOR1_XENLA / P27120 Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis (African clawed frog)
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
460 amino acids: PaperBLAST, CDD

HMM-only sequences

(Since these sequences' annotations are outside the definition for odc, HMM hits that are over 40% similar to these sequences will be scored as moderate confidence.)

A8G927 16S rRNA (adenine1408-N1)-methyltransferase (EC 2.1.1.180) from Streptoalloteichus tenebrarius
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
723 amino acids: PaperBLAST, CDD