GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for odc (L-ornithine decarboxylase) in L-arginine catabolism

Or see other characterized proteins similar to odc

Or see all steps for L-arginine catabolism

Or cluster curated proteins matching a keyword

Definition of odc

Fetched 32 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 31 of these sequences

Found 3 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by cluster

Caenorhabditis elegans

DCOR_CAEEL / P41931 Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
422 amino acids: PaperBLAST, CDD (Cluster 1)

Candida albicans

GB|AAC49877.1 ornithine decarboxylase (ODC); EC 4.1.1.17 from Candida albicans
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
473 amino acids: PaperBLAST, CDD (Cluster 1)

Capsicum annuum

DCOR_CAPAN / Q8S3N2 Ornithine decarboxylase; ODC; CaODC1; CapODC; EC 4.1.1.17 from Capsicum annuum (Capsicum pepper)
Q8S3N2 ornithine decarboxylase (EC 4.1.1.17) from Capsicum annuum
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
435 amino acids: PaperBLAST, CDD (Cluster 1)

Chlamydomonas reinhardtii

A8J7E8 ornithine decarboxylase (EC 4.1.1.17) from Chlamydomonas reinhardtii
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
542 amino acids: PaperBLAST, CDD (Singleton 1)

Crithidia fasciculata

P90517 ornithine decarboxylase (EC 4.1.1.17) from Crithidia fasciculata
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
721 amino acids: PaperBLAST, CDD (Cluster 3)

Datura stramonium

P50134 ornithine decarboxylase (EC 4.1.1.17) from Datura stramonium
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
431 amino acids: PaperBLAST, CDD (Cluster 1)

Dictyostelium discoideum

Q54UF3 ornithine decarboxylase (EC 4.1.1.17) from Dictyostelium discoideum
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
461 amino acids: PaperBLAST, CDD (Cluster 1)

Drosophila melanogaster

DCOR1_DROME / P40807 Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster (Fruit fly)
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
394 amino acids: PaperBLAST, CDD (Cluster 1)

Emericella nidulans

CH_121968 ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
450 amino acids: PaperBLAST, CDD (Cluster 1)

Entamoeba histolytica

Q58P26 ornithine decarboxylase (EC 4.1.1.17) from Entamoeba histolytica
PFams: Orn_Arg_deC_N, Ala_racemase_N, Orn_DAP_Arg_deC
413 amino acids: PaperBLAST, CDD (Cluster 1)

Erythroxylum coca

G4XUJ8 ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
413 amino acids: PaperBLAST, CDD (Cluster 1)

Escherichia coli

b2965 ornithine decarboxylase, biosynthetic (EC 4.1.1.17) from Escherichia coli K-12 substr. MG1655
P21169 ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
P21169 ornithine decarboxylase, biosynthetic (EC 4.1.1.17) from Escherichia coli (strain K12)
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
711 amino acids: PaperBLAST, CDD (Cluster 2)

b0693 ornithine decarboxylase, degradative (EC 4.1.1.17) from Escherichia coli K-12 substr. MG1655
P24169 ornithine decarboxylase, degradative (EC 4.1.1.17) from Escherichia coli (strain K12)
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
732 amino acids: PaperBLAST, CDD (Cluster 2)

Grateloupia imbricata

C9W982 ornithine decarboxylase (EC 4.1.1.17) from Grateloupia imbricata
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
420 amino acids: PaperBLAST, CDD (Cluster 1)

Homo sapiens

DCOR_HUMAN / P11926 Ornithine decarboxylase; ODC; EC 4.1.1.17 from Homo sapiens (Human)
P11926 ornithine decarboxylase (EC 4.1.1.17) from Homo sapiens
P11926 ornithine decarboxylase subunit (EC 4.1.1.17) from Homo sapiens
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
461 amino acids: PaperBLAST, CDD (Cluster 1)

Lactobacillus brevis

H8ZI01 ornithine decarboxylase (EC 4.1.1.17) from Lactobacillus brevis
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
721 amino acids: PaperBLAST, CDD (Cluster 2)

Lactobacillus casei

Q038E5 ornithine decarboxylase (EC 4.1.1.17) from Lactobacillus casei
PFams: OKR_DC_1, OKR_DC_1_C
696 amino acids: PaperBLAST, CDD (Cluster 2)

Lactobacillus saerimneri

P43099 ornithine decarboxylase (EC 4.1.1.17) from Lactobacillus saerimneri 30a
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
731 amino acids: PaperBLAST, CDD (Cluster 2)

Leishmania donovani

DCOR_LEIDO / P27116 Ornithine decarboxylase; ODC; EC 4.1.1.17 from Leishmania donovani
P27116 ornithine decarboxylase (EC 4.1.1.17) from Leishmania donovani
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
707 amino acids: PaperBLAST, CDD (Cluster 3)

Leishmania guyanensis

A0A1E1IR91 ornithine decarboxylase (EC 4.1.1.17) from Leishmania guyanensis
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
680 amino acids: PaperBLAST, CDD (Cluster 3)

Mus musculus

DCOR_MOUSE / P00860 Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus (Mouse)
P00860 ornithine decarboxylase (EC 4.1.1.17) from Mus musculus
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
461 amino acids: PaperBLAST, CDD (Cluster 1)

Nicotiana glutinosa

Q9FPK5 ornithine decarboxylase (EC 4.1.1.17) from Nicotiana glutinosa
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
432 amino acids: PaperBLAST, CDD (Cluster 1)

Oenococcus oeni

Q5ZH57 ornithine decarboxylase (EC 4.1.1.17) from Oenococcus oeni
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
745 amino acids: PaperBLAST, CDD (Cluster 2)

Ovis aries

W5Q1G7 ornithine decarboxylase (EC 4.1.1.17) from Ovis aries
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
461 amino acids: PaperBLAST, CDD (Cluster 1)

Plasmodium falciparum

Q9U8D4 ornithine decarboxylase (EC 4.1.1.17); adenosylmethionine decarboxylase (EC 4.1.1.50) from Plasmodium falciparum
PFams: SAM_decarbox, Orn_Arg_deC_N
1419 amino acids: PaperBLAST, CDD (Singleton 2)

Rattus norvegicus

P09057 ornithine decarboxylase (EC 4.1.1.17) from Rattus norvegicus
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
461 amino acids: PaperBLAST, CDD (Cluster 1)

Saccharomyces cerevisiae

DCOR_YEAST / P08432 Ornithine decarboxylase; ODC; EC 4.1.1.17 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
P08432 ornithine decarboxylase (EC 4.1.1.17) from Saccharomyces cerevisiae
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
466 amino acids: PaperBLAST, CDD (Cluster 1)

Serratia liquefaciens

A4Q8H0 ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
720 amino acids: PaperBLAST, CDD (Cluster 2)

Solanum lycopersicum

DCOR_SOLLC / O22616 Ornithine decarboxylase; ODC; LeODC; EC 4.1.1.17 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
O22616 ornithine decarboxylase (EC 4.1.1.17) from Solanum lycopersicum
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
431 amino acids: PaperBLAST, CDD (Cluster 1)

Streptoalloteichus tenebrarius

A8G927 16S rRNA (adenine1408-N1)-methyltransferase (EC 2.1.1.180) (from HMM only) from Streptoalloteichus tenebrarius
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
723 amino acids: PaperBLAST, CDD (Cluster 2)

Trypanosoma brucei

DCOR_TRYBB / P07805 Ornithine decarboxylase; ODC; EC 4.1.1.17 from Trypanosoma brucei brucei
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
423 amino acids: PaperBLAST, CDD (Cluster 1)

Xenopus laevis

DCOR1_XENLA / P27120 Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis (African clawed frog)
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
460 amino acids: PaperBLAST, CDD (Cluster 1)