GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for ortB (2-amino-4-oxopentanoate thiolase, beta subunit) in L-arginine catabolism

Or see other characterized proteins similar to ortB

Or see all steps for L-arginine catabolism

Or cluster curated proteins matching a keyword

Definition of ortB

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Acetoanaerobium sticklandii

ORTB_UNKP / C1FW07 2-amino-4-ketopentanoate thiolase beta subunit; AKP thiolase; AKPT; EC 2.3.1.263 from Unknown prokaryotic organism
C1FW07 2-amino-4-oxopentanoate thiolase (subunit 2/2) (EC 2.3.1.263) from Acetoanaerobium sticklandii
C1FW07 AKP thiolase β subunit (EC 2.3.1.263) from Unknown prokaryotic organism
PFams: PALP
Heteromeric, 472 amino acids: PaperBLAST, CDD (Cluster 1)

ORTB_ACESD / E3PY97 2-amino-4-ketopentanoate thiolase beta subunit; AKP thiolase; AKPT; EC 2.3.1.263 from Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIMB 10654) (Clostridium sticklandii)
PFams: PALP
Heteromeric, 469 amino acids: PaperBLAST, CDD (Cluster 1)

Unknown prokaryotic

ORTB_UNKP / C1FW07 2-amino-4-ketopentanoate thiolase beta subunit; AKP thiolase; AKPT; EC 2.3.1.263 from Unknown prokaryotic organism
C1FW07 2-amino-4-oxopentanoate thiolase (subunit 2/2) (EC 2.3.1.263) from Acetoanaerobium sticklandii
C1FW07 AKP thiolase β subunit (EC 2.3.1.263) from Unknown prokaryotic organism
PFams: PALP
Heteromeric, 472 amino acids: PaperBLAST, CDD (Cluster 1)