GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for prdF (proline racemase) in L-arginine catabolism

Or see other characterized proteins similar to prdF

Or see all steps for L-arginine catabolism

Or cluster curated proteins matching a keyword

Definition of prdF

Fetched 8 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 299-423 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

PRAC_CLODI / A8DEZ8 Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile (Peptoclostridium difficile)
A8DEZ8 proline racemase (EC 5.1.1.4) from Clostridioides difficile
Q17ZY4 proline racemase (EC 5.1.1.4) from Clostridioides difficile
PFams: Pro_racemase
335 amino acids: PaperBLAST, CDD, Compare to cluster

B8LFE4 proline racemase (EC 5.1.1.4) from Trypanosoma vivax
PFams: Pro_racemase
345 amino acids: PaperBLAST, CDD, Compare to cluster

H3ZMH5 proline racemase (EC 5.1.1.4); 4-hydroxyproline epimerase (EC 5.1.1.8) from Thermococcus litoralis
PFams: Pro_racemase, PhzC-PhzF
331 amino acids: PaperBLAST, CDD, Compare to cluster

M0LMI3 proline racemase (EC 5.1.1.4) from Haloarcula japonica
PFams: Pro_racemase
323 amino acids: PaperBLAST, CDD, Compare to cluster

Q9L4Q3 proline racemase (EC 5.1.1.4) from Acetoanaerobium sticklandii
PFams: Pro_racemase, PhzC-PhzF
299 amino acids: PaperBLAST, CDD, Compare to cluster

S0APF4 proline racemase (EC 5.1.1.4); 4-hydroxyproline epimerase (EC 5.1.1.8) from Ferroplasma acidarmanus
PFams: Pro_racemase, PhzC-PhzF
330 amino acids: PaperBLAST, CDD, Compare to cluster

PRCMA_TRYCC / Q4DA80 Proline racemase A; TcPA45-A; TcPRACA; rTcPA45; EC 5.1.1.4 from Trypanosoma cruzi (strain CL Brener)
Q4DA80 proline racemase (EC 5.1.1.4) from Trypanosoma cruzi
PFams: Pro_racemase
423 amino acids: PaperBLAST, CDD, Compare to cluster

PRCMB_TRYCC / Q868H8 Proline racemase B; TcPA45-B; TcPRACB; EC 5.1.1.4 from Trypanosoma cruzi (strain CL Brener)
Q868H8 proline racemase (EC 5.1.1.4) from Trypanosoma cruzi
PFams: Pro_racemase
354 amino acids: PaperBLAST, CDD, Compare to cluster