GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for puuA (glutamate-putrescine ligase) in L-arginine catabolism

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Definition of puuA

Fetched 11 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 11 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 423-472 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b1297 glutamate-putrescine ligase (EC 6.3.1.11) from Escherichia coli K-12 substr. MG1655
PUUA_ECOLI / P78061 Gamma-glutamylputrescine synthetase PuuA; Gamma-Glu-Put synthetase; Glutamate--putrescine ligase; EC 6.3.1.11 from Escherichia coli (strain K12)
P78061 glutamate-putrescine ligase (EC 6.3.1.11) from Escherichia coli (strain K12)
PFams: Gln-synt_C
472 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS23160 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Burkholderia phytofirmans PsJN
PFams: Gln-synt_C
444 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS10710 Glutamate--putrescine ligase (EC 6.3.1.11) from Klebsiella michiganensis M5al
PFams: Gln-synt_C
472 amino acids: PaperBLAST, CDD, Compare to cluster

SO1268 Glutamate--putrescine ligase (EC 6.3.1.11) from Shewanella oneidensis MR-1
PFams: Gln-synt_C
451 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_27140 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas simiae WCS417
PFams: Gln-synt_C
458 amino acids: PaperBLAST, CDD, Compare to cluster

Psest_4288 Glutamate--putrescine ligase (EC 6.3.1.11) from Pseudomonas stutzeri RCH2
PFams: Gln-synt_C
457 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_925 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens GW456-L13
PFams: Gln-synt_C
458 amino acids: PaperBLAST, CDD, Compare to cluster

Pf1N1B4_2254 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens FW300-N1B4
PFams: Gln-synt_C
426 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_08595 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens FW300-N2E3
PFams: Gln-synt_C
458 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_13135 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens FW300-N2C3
PFams: Gln-synt_C
458 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_4509 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens FW300-N2E2
PFams: Gln-synt_C
423 amino acids: PaperBLAST, CDD, Compare to cluster