GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for puuB (gamma-glutamylputrescine oxidase) in L-arginine catabolism

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Definition of puuB

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 394-427 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b1301 γ-glutamylputrescine oxidase from Escherichia coli K-12 substr. MG1655
PUUB_ECOLI / P37906 Gamma-glutamylputrescine oxidoreductase; Gamma-Glu-Put oxidase; Gamma-glutamylputrescine oxidase; EC 1.4.3.- from Escherichia coli (strain K12)
P37906 γ-glutamylputrescine oxidase from Escherichia coli (strain K12)
PFams: Thi4, FAD_binding_3, DAO, FAD_binding_2, NAD_binding_8
426 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_21495 gamma-glutamylputrescine oxidase (EC 1.4.3.-) from Pseudomonas fluorescens FW300-N2C3
PFams: Thi4, FAD_binding_3, DAO, FAD_binding_2
427 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_80 gamma-glutamylputrescine oxidase (EC 1.4.3.-) from Pseudomonas fluorescens FW300-N2E2
PFams: DAO
394 amino acids: PaperBLAST, CDD, Compare to cluster