GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for puuC (gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase) in L-arginine catabolism

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Definition of puuC

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 495-497 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b1300 γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (EC 1.2.1.19; EC 1.2.1.24; EC 1.2.1.99) from Escherichia coli K-12 substr. MG1655
PUUC_ECOLI / P23883 NADP/NAD-dependent aldehyde dehydrogenase PuuC; ALDH; 3-hydroxypropionaldehyde dehydrogenase; Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Gamma-Glu-gamma-aminobutyraldehyde dehydrogenase; EC 1.2.1.5 from Escherichia coli (strain K12)
P23883 4-(gamma-glutamylamino)butanal dehydrogenase (EC 1.2.1.99) from Escherichia coli
P23883 γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (EC 1.2.1.19; EC 1.2.1.24; EC 1.2.1.99) from Escherichia coli (strain K12)
PFams: Aldedh
495 amino acids: PaperBLAST, CDD, Compare to cluster

Q88CA3 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: Aldedh
497 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_27745 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas simiae WCS417
PFams: Aldedh
497 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_805 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas fluorescens GW456-L13
PFams: Aldedh
497 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_12580 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas fluorescens FW300-N2C3
PFams: Aldedh
497 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_4383 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) from Pseudomonas fluorescens FW300-N2E2
PFams: Aldedh
497 amino acids: PaperBLAST, CDD, Compare to cluster