GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for puuD (gamma-glutamyl-gamma-aminobutyrate hydrolase) in L-arginine catabolism

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Definition of puuD

Fetched 8 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 253-267 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b1298 γ-glutamyl-γ-aminobutyrate hydrolase (EC 3.5.1.94) from Escherichia coli K-12 substr. MG1655
PUUD_ECOLI / P76038 Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD; Gamma-Glu-GABA hydrolase; EC 3.5.1.94 from Escherichia coli (strain K12)
P76038 gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) from Escherichia coli K-12
P76038 γ-glutamyl-γ-aminobutyrate hydrolase (EC 3.5.1.94) from Escherichia coli (strain K12)
GI|58197513 gamma-glutamyl-gamma-aminobutyrate hydrolase; EC 3.5.1.94 from Escherichia coli K12
PFams: Peptidase_C26, GATase
254 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS10705 Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) from Klebsiella michiganensis M5al
PFams: Peptidase_C26, GATase
254 amino acids: PaperBLAST, CDD, Compare to cluster

SO1267 Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) from Shewanella oneidensis MR-1
PFams: Peptidase_C26, GATase
253 amino acids: PaperBLAST, CDD, Compare to cluster

Sama_0794 gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) from Shewanella amazonensis SB2B
PFams: Peptidase_C26, GATase
267 amino acids: PaperBLAST, CDD, Compare to cluster

Sama_2645 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Shewanella amazonensis SB2B
PFams: Peptidase_C26, GATase
254 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_29305 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens FW300-N2E3
PFams: Peptidase_C26, GATase
253 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_13140 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens FW300-N2C3
PFams: Peptidase_C26, GATase
258 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_4510 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens FW300-N2E2
PFams: Peptidase_C26, GATase
258 amino acids: PaperBLAST, CDD, Compare to cluster