GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for rocD (ornithine aminotransferase) in L-arginine catabolism

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Definition of rocD

Fetched 18 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 18 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 401-475 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

B1A0U3 ornithine aminotransferase (EC 2.6.1.13) from Pisum sativum
PFams: Aminotran_3
469 amino acids: PaperBLAST, CDD, Compare to cluster

OAT_HUMAN / P04181 Ornithine aminotransferase, mitochondrial; Ornithine delta-aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Homo sapiens (Human)
P04181 ornithine aminotransferase (EC 2.6.1.13) from Homo sapiens
P04181 Ornithine aminotransferase (EC 2.6.1.13) from Homo sapiens
PFams: Aminotran_3
439 amino acids: PaperBLAST, CDD, Compare to cluster

OAT_RAT / P04182 Ornithine aminotransferase, mitochondrial; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Rattus norvegicus (Rat)
P04182 ornithine aminotransferase (EC 2.6.1.13) from Rattus norvegicus
PFams: Aminotran_3
439 amino acids: PaperBLAST, CDD, Compare to cluster

P31893 ornithine aminotransferase (EC 2.6.1.13) from Vigna aconitifolia
PFams: Aminotran_3
426 amino acids: PaperBLAST, CDD, Compare to cluster

Q2Z0F8 ornithine aminotransferase (EC 2.6.1.13) from Agaricus bisporus
PFams: Aminotran_3, Aminotran_1_2
466 amino acids: PaperBLAST, CDD, Compare to cluster

OAT_PLAF7 / Q6LFH8 Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Plasmodium falciparum (isolate 3D7)
Q6LFH8 ornithine aminotransferase (EC 2.6.1.13) from Plasmodium falciparum
PFams: Aminotran_3
414 amino acids: PaperBLAST, CDD, Compare to cluster

Q98TS5 ornithine aminotransferase (EC 2.6.1.13) from Xenopus laevis
PFams: Aminotran_3
439 amino acids: PaperBLAST, CDD, Compare to cluster

OAT_ARATH / Q9FNK4 Ornithine aminotransferase, mitochondrial; Ornithine delta-aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Arabidopsis thaliana (Mouse-ear cress)
Q9FNK4 ornithine aminotransferase (EC 2.6.1.13) from Arabidopsis thaliana
Q9FNK4 ornithine-δ-aminotransferase (EC 2.6.1.13) from Arabidopsis thaliana
PFams: Aminotran_3
475 amino acids: PaperBLAST, CDD, Compare to cluster

CH_122124 ornithine aminotransferase; EC 2.6.1.13 from Emericella nidulans
PFams: Aminotran_3
454 amino acids: PaperBLAST, CDD, Compare to cluster

CH_124176 ornithine aminotransferase (from HMM only) from Magnaporthe grisea 70-15
PFams: Aminotran_3
442 amino acids: PaperBLAST, CDD, Compare to cluster

OAT_SCHPO / Q9P7L5 Ornithine aminotransferase car2; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
RF|NP_596588.1 ornithine transaminase Car2; EC 2.6.1.13 from Schizosaccharomyces pombe
PFams: Aminotran_3
438 amino acids: PaperBLAST, CDD, Compare to cluster

OAT_YEAST / P07991 Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: Aminotran_3
424 amino acids: PaperBLAST, CDD, Compare to cluster

OAT_BACSU / P38021 Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis (strain 168)
PFams: Aminotran_3
401 amino acids: PaperBLAST, CDD, Compare to cluster

OAT_ORYSJ / Q10G56 Ornithine aminotransferase, mitochondrial; Ornithine delta-aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Oryza sativa subsp. japonica (Rice)
PFams: Aminotran_3, Aminotran_1_2
473 amino acids: PaperBLAST, CDD, Compare to cluster

ORNAT_THEKO / Q5JEW1 Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
PFams: Aminotran_3
445 amino acids: PaperBLAST, CDD, Compare to cluster

OAT_KLULA / Q6CWC1 Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast) (Candida sphaerica)
PFams: Aminotran_3
437 amino acids: PaperBLAST, CDD, Compare to cluster

Q1RPP3 ornithine δ-aminotransferase (EC 2.6.1.13) from Pinus sylvestris
PFams: Aminotran_3
468 amino acids: PaperBLAST, CDD, Compare to cluster

Echvi_0577 Ornithine aminotransferase (EC 2.6.1.13) from Echinicola vietnamensis KMM 6221, DSM 17526
PFams: Aminotran_3
413 amino acids: PaperBLAST, CDD, Compare to cluster