GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to rocD

Finding the characterized proteins for rocD (ornithine aminotransferase) in L-arginine catabolism

Or see clustering for step rocD

Or see all steps for L-arginine catabolism

Or cluster curated proteins matching a keyword

Definition of rocD

Fetched 18 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 3 other characterized sequences. (Found 21 hits including self hits.)

There are also 1 HMM-only high-coverage hits.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for rocD.)

ASRAC_PYRHO / O58478 Alanine/serine racemase; ASR; Ala/Ser racemase; EC 5.1.1.-; EC 5.1.1.1 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
PFams: Aminotran_3
474 amino acids: PaperBLAST, CDD, SwissProt::O58478
48% identical to

ORNAT_THEKO / Q5JEW1 Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
PFams: Aminotran_3
445 amino acids: PaperBLAST, CDD

LYSJ_THET2 / Q93R93 [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.- from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Q93R93 L-2-aminoadipate semialdehyde transaminase monomer from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: Aminotran_3
395 amino acids: PaperBLAST, CDD, SwissProt::Q93R93
41% identical to

OAT_BACSU / P38021 Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis (strain 168)
PFams: Aminotran_3
401 amino acids: PaperBLAST, CDD

BARAC_PYRHO / O57878 Broad substrate specificity amino-acid racemase; BAR; EC 5.1.1.10 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
O57878 amino-acid racemase (EC 5.1.1.10) from Pyrococcus horikoshii
PFams: Aminotran_3
466 amino acids: PaperBLAST, CDD, BRENDA::O57878
40% identical to

ORNAT_THEKO / Q5JEW1 Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
PFams: Aminotran_3
445 amino acids: PaperBLAST, CDD

HMM-only sequences

(Since these sequences' annotations are outside the definition for rocD, HMM hits that are over 40% similar to these sequences will be scored as moderate confidence.)

CH_124176 ornithine aminotransferase from Magnaporthe grisea 70-15
PFams: Aminotran_3
442 amino acids: PaperBLAST, CDD