GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for rocF (arginase) in L-arginine catabolism

Or see other characterized proteins similar to rocF

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Or cluster curated proteins matching a keyword

Definition of rocF

Fetched 35 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 33 of these sequences

Found 2 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 296-368 amino acids (not heteromeric)

ARGI_BACSU / P39138 Arginase; EC 3.5.3.1 from Bacillus subtilis (strain 168)
P39138 arginase (EC 3.5.3.1) from Bacillus subtilis
PFams: Arginase
296 amino acids: PaperBLAST, CDD, Compare to cluster

A0A0D5ZYA4 arginase (EC 3.5.3.1) from Heteropneustes fossilis
PFams: Arginase
341 amino acids: PaperBLAST, CDD, Compare to cluster

O08701 arginase (EC 3.5.3.1) from Rattus norvegicus
PFams: Arginase
354 amino acids: PaperBLAST, CDD, Compare to cluster

O96394 arginase (EC 3.5.3.1) from Leishmania amazonensis
PFams: Arginase
329 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI1_HUMAN / P05089 Arginase-1; Liver-type arginase; Type I arginase; EC 3.5.3.1 from Homo sapiens (Human)
P05089 arginase (EC 3.5.3.1) from Homo sapiens
P05089 Arginase-1 (EC 3.5.3.1) from Homo sapiens
PFams: Arginase
322 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI1_RAT / P07824 Arginase-1; Liver-type arginase; Type I arginase; EC 3.5.3.1 from Rattus norvegicus (Rat)
P07824 arginase (EC 3.5.3.1) from Rattus norvegicus
PFams: Arginase
323 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI2_HUMAN / P78540 Arginase-2, mitochondrial; Arginase II; Kidney-type arginase; Non-hepatic arginase; Type II arginase; EC 3.5.3.1 from Homo sapiens (Human)
P78540 arginase (EC 3.5.3.1) from Homo sapiens
P78540 Arginase-2, mitochondrial (EC 3.5.3.1) from Homo sapiens
PFams: Arginase
354 amino acids: PaperBLAST, CDD, Compare to cluster

Q4A3J0 arginase (EC 3.5.3.1) from Cyprinus carpio
PFams: Arginase
347 amino acids: PaperBLAST, CDD, Compare to cluster

Q4A3J1 arginase (EC 3.5.3.1) from Cyprinus carpio
PFams: Arginase
347 amino acids: PaperBLAST, CDD, Compare to cluster

Q4A3J2 arginase (EC 3.5.3.1) from Cyprinus carpio
PFams: Arginase
340 amino acids: PaperBLAST, CDD, Compare to cluster

Q4A4U9 arginase (EC 3.5.3.1) from Cyprinus carpio
PFams: Arginase
347 amino acids: PaperBLAST, CDD, Compare to cluster

Q4VK78 arginase (EC 3.5.3.1) from Oryctolagus cuniculus
PFams: Arginase
354 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI1_MOUSE / Q61176 Arginase-1; Liver-type arginase; Type I arginase; EC 3.5.3.1 from Mus musculus (Mouse)
Q61176 arginase (EC 3.5.3.1) from Mus musculus
PFams: Arginase
323 amino acids: PaperBLAST, CDD, Compare to cluster

Q6TUJ5 arginase (EC 3.5.3.1) from Leishmania mexicana
PFams: Arginase
329 amino acids: PaperBLAST, CDD, Compare to cluster

Q6WVP6 arginase (EC 3.5.3.1) from Schistosoma mansoni
PFams: Arginase
364 amino acids: PaperBLAST, CDD, Compare to cluster

U6BQJ3 arginase (EC 3.5.3.1) from Heteropneustes fossilis
PFams: Arginase
347 amino acids: PaperBLAST, CDD, Compare to cluster

CH_122058 arginase; EC 3.5.3.1 from Emericella nidulans
PFams: Arginase
324 amino acids: PaperBLAST, CDD, Compare to cluster

RF|NP_595133.1 arginase Car1; EC 3.5.3.1 from Schizosaccharomyces pombe
PFams: Arginase
323 amino acids: PaperBLAST, CDD, Compare to cluster

RF|NP_593549.1 arginase Aru1; EC 3.5.3.1 from Schizosaccharomyces pombe
PFams: Arginase
323 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI1_ORYSI / B8AU84 Arginase 1, mitochondrial; Arginine amidohydrolase 1; EC 3.5.3.1 from Oryza sativa subsp. indica (Rice)
PFams: Arginase
340 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI2_MOUSE / O08691 Arginase-2, mitochondrial; Arginase II; Kidney-type arginase; Non-hepatic arginase; Type II arginase; EC 3.5.3.1 from Mus musculus (Mouse)
PFams: Arginase
354 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI_YEAST / P00812 Arginase; EC 3.5.3.1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
P00812 arginase subunit (EC 3.5.3.1) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
PFams: Arginase
333 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI1_XENLA / P30759 Arginase-1; Arginase, hepatic; Type I arginase; EC 3.5.3.1 from Xenopus laevis (African clawed frog)
PFams: Arginase
316 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI_NEUCR / P33280 Arginase; EC 3.5.3.1 from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
PFams: Arginase
358 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI_BACCD / P53608 Arginase; EC 3.5.3.1 from Bacillus caldovelox
PFams: Arginase
299 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI_KLULA / Q6CLS8 Arginase; EC 3.5.3.1 from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast) (Candida sphaerica)
PFams: Arginase
319 amino acids: PaperBLAST, CDD, Compare to cluster

P14012 arginase subunit (EC 3.5.3.1) from Agrobacterium fabrum (strain C58 / ATCC 33970)
PFams: Arginase
324 amino acids: PaperBLAST, CDD, Compare to cluster

N515DRAFT_0348 Arginase (EC 3.5.3.1) from Dyella japonica UNC79MFTsu3.2
PFams: Arginase
304 amino acids: PaperBLAST, CDD, Compare to cluster

Ac3H11_701 Arginase (EC 3.5.3.1) from Acidovorax sp. GW101-3H11
PFams: Arginase
368 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 338-344 amino acids (not heteromeric)

ARGI1_ARATH / P46637 Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana (Mouse-ear cress)
P46637 arginase (EC 3.5.3.1) from Arabidopsis thaliana
PFams: Arginase
342 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI2_ARATH / Q9ZPF5 Arginase 2, chloroplastic/mitochondrial; Agmatinase ARGAH2; Arginine amidohydrolase 2; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Arginase
344 amino acids: PaperBLAST, CDD, Compare to cluster

Q5UNS2 arginase (EC 3.5.3.1) from Solanum lycopersicum
Q5UNS2 arginase (EC 3.5.3.1) from Solanum lycopersicum
PFams: Arginase
338 amino acids: PaperBLAST, CDD, Compare to cluster

Q5UNS1 arginase (EC 3.5.3.1) from Solanum lycopersicum
Q5UNS1 arginase (EC 3.5.3.1) from Solanum lycopersicum
PFams: Arginase
338 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

O25949 arginase (EC 3.5.3.1) from Helicobacter pylori
PFams: Arginase
322 amino acids: PaperBLAST, CDD

Q8I384 arginase (EC 3.5.3.1) from Plasmodium falciparum 3D7
PFams: Arginase
411 amino acids: PaperBLAST, CDD