GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for speB (agmatinase) in L-arginine catabolism

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Definition of speB

Fetched 19 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 18 of these sequences

Found 2 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 271-361 amino acids (not heteromeric)

SPEB_HUMAN / Q9BSE5 Agmatinase, mitochondrial; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Homo sapiens (Human)
Q9BSE5 agmatinase (EC 3.5.3.11) from Homo sapiens
Q9BSE5 agmatinase (EC 3.5.3.11) from Homo sapiens
PFams: Arginase
352 amino acids: PaperBLAST, CDD, Compare to cluster

D4GWG4 agmatinase (EC 3.5.3.11) from Haloferax volcanii
PFams: Arginase
271 amino acids: PaperBLAST, CDD, Compare to cluster

SPEB_METJA / Q57757 Agmatinase; EC 3.5.3.11 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Q57757 agmatinase (EC 3.5.3.11) from Methanocaldococcus jannaschii
PFams: Arginase
284 amino acids: PaperBLAST, CDD, Compare to cluster

GPUA_PSEAE / Q9I6K2 Guanidinopropionase; EC 3.5.3.17 (from HMM only) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6K2 Guanidinopropionase (EC 3.5.3.17) from Pseudomonas aeruginosa
PFams: Arginase
318 amino acids: PaperBLAST, CDD, Compare to cluster

W5PHZ9 agmatinase (EC 3.5.3.11) from Ovis aries
PFams: Arginase
361 amino acids: PaperBLAST, CDD, Compare to cluster

b2937 agmatinase (EC 3.5.3.11) from Escherichia coli K-12 substr. MG1655
SPEB_ECOLI / P60651 Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Escherichia coli (strain K12)
P60651 agmatinase (EC 3.5.3.11) from Escherichia coli (strain K12)
RF|NP_417412 agmatinase; EC 3.5.3.11 from Escherichia coli K12
PFams: Arginase
306 amino acids: PaperBLAST, CDD, Compare to cluster

SPEB_MOUSE / A2AS89 Agmatinase, mitochondrial; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Mus musculus (Mouse)
PFams: Arginase
358 amino acids: PaperBLAST, CDD, Compare to cluster

AGMT_PYRHO / O57839 Agmatinase; EC 3.5.3.11 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
PFams: Arginase
283 amino acids: PaperBLAST, CDD, Compare to cluster

PAH_STRCL / P0DJQ3 Proclavaminate amidinohydrolase; Proclavaminic acid amidino hydrolase; EC 3.5.3.22 from Streptomyces clavuligerus
P0DJQ3 proclavaminate amidino hydrolase subunit (EC 3.5.3.22) (from HMM only) from Streptomyces clavuligerus
PFams: Arginase
313 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI1_ARATH / P46637 Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana (Mouse-ear cress)
P46637 arginase (EC 3.5.3.1) from Arabidopsis thaliana
PFams: Arginase
342 amino acids: PaperBLAST, CDD, Compare to cluster

SEPBH_THET8 / Q5SJ85 N(1)-aminopropylagmatine ureohydrolase; Protein SpeB homolog; EC 3.5.3.24 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Q5SJ85 N1-aminopropylagmatine ureohydrolase (EC 3.5.3.24) from Thermus thermophilus
Q5SJ85 aminopropylagmatine ureohydrolase (EC 3.5.3.24) (from HMM only) from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
PFams: Arginase
293 amino acids: PaperBLAST, CDD, Compare to cluster

SPEB_PROMI / Q7X3P1 Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis
PFams: Arginase
306 amino acids: PaperBLAST, CDD, Compare to cluster

GBUA_PSEAE / Q9I3S3 Guanidinobutyrase; EC 3.5.3.7 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I3S3 guanidinobutyrase subunit (EC 3.5.3.7) (from HMM only) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Arginase
319 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI2_ARATH / Q9ZPF5 Arginase 2, chloroplastic/mitochondrial; Agmatinase ARGAH2; Arginine amidohydrolase 2; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Arginase
344 amino acids: PaperBLAST, CDD, Compare to cluster

Q88EE2 guanidinobutyrase subunit (EC 3.5.3.7) (from HMM only) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: Arginase
320 amino acids: PaperBLAST, CDD, Compare to cluster

Q8KZT5 D-arginase (EC 3.5.3.10); guanidinobutyrase (EC 3.5.3.7) (from HMM only) from Arthrobacter sp.
Q8KZT5 guanidinobutyrase subunit (EC 3.5.3.7) from Arthrobacter sp. (strain KUJ 8602)
PFams: Arginase
353 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 288-293 amino acids (not heteromeric)

SPEBH_THEKO / Q5JI38 N(1)-aminopropylagmatine ureohydrolase; Agmatinase; Protein SpeB homolog; EC 3.5.3.24; EC 3.5.3.11 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Q5JI38 N1-aminopropylagmatine ureohydrolase (EC 3.5.3.24) from Thermococcus kodakarensis
Q5JI38 aminopropylagmatine ureohydrolase (EC 3.5.3.24) from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
PFams: Arginase
288 amino acids: PaperBLAST, CDD, Compare to cluster

SPEBH_THET2 / Q72JK8 N(1)-aminopropylagmatine ureohydrolase; Protein SpeB homolog; EC 3.5.3.24 (from HMM only) from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: Arginase
293 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

Q8YUM9 agmatinase (EC 3.5.3.11) from Anabaena sp.
PFams: Arginase
346 amino acids: PaperBLAST, CDD