GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to speB

Finding the characterized proteins for speB (agmatinase) in L-arginine catabolism

Or see clustering for step speB

Or see all steps for L-arginine catabolism

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Definition of speB

Fetched 19 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 5 other characterized sequences. (Found 24 hits including self hits.)

There are also 7 HMM-only high-coverage hits.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for speB.)

Q5UNS2 arginase (EC 3.5.3.1) from Solanum lycopersicum
Q5UNS2 arginase (EC 3.5.3.1) from Solanum lycopersicum
PFams: Arginase
338 amino acids: PaperBLAST, CDD, metacyc::MONOMER-14987
87% identical to

ARGI1_ARATH / P46637 Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana (Mouse-ear cress)
P46637 arginase (EC 3.5.3.1) from Arabidopsis thaliana
PFams: Arginase
342 amino acids: PaperBLAST, CDD

ARGI1_ORYSI / B8AU84 Arginase 1, mitochondrial; Arginine amidohydrolase 1; EC 3.5.3.1 from Oryza sativa subsp. indica (Rice)
PFams: Arginase
340 amino acids: PaperBLAST, CDD, SwissProt::B8AU84
87% identical to

ARGI1_ARATH / P46637 Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana (Mouse-ear cress)
P46637 arginase (EC 3.5.3.1) from Arabidopsis thaliana
PFams: Arginase
342 amino acids: PaperBLAST, CDD

Q5UNS1 arginase (EC 3.5.3.1) from Solanum lycopersicum
Q5UNS1 arginase (EC 3.5.3.1) from Solanum lycopersicum
PFams: Arginase
338 amino acids: PaperBLAST, CDD, metacyc::MONOMER-14988
84% identical to

ARGI1_ARATH / P46637 Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana (Mouse-ear cress)
P46637 arginase (EC 3.5.3.1) from Arabidopsis thaliana
PFams: Arginase
342 amino acids: PaperBLAST, CDD

GBU1_KLULA / Q6CIB4 Guanidinobutyrase; EC 3.5.3.7 from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast) (Candida sphaerica)
Q6CIB4 guanidinobutyrase (EC 3.5.3.7) from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
PFams: Arginase
410 amino acids: PaperBLAST, CDD, SwissProt::Q6CIB4
41% identical to

Q8KZT5 D-arginase (EC 3.5.3.10); guanidinobutyrase (EC 3.5.3.7) from Arthrobacter sp.
Q8KZT5 guanidinobutyrase subunit (EC 3.5.3.7) from Arthrobacter sp. (strain KUJ 8602)
PFams: Arginase
353 amino acids: PaperBLAST, CDD

CH_124010 agmatinase from Magnaporthe grisea 70-15
PFams: Arginase
395 amino acids: PaperBLAST, CDD, CharProtDB::CH_124010
40% identical to

Q8KZT5 D-arginase (EC 3.5.3.10); guanidinobutyrase (EC 3.5.3.7) from Arthrobacter sp.
Q8KZT5 guanidinobutyrase subunit (EC 3.5.3.7) from Arthrobacter sp. (strain KUJ 8602)
PFams: Arginase
353 amino acids: PaperBLAST, CDD

HMM-only sequences

(Since these sequences' annotations are outside the definition for speB, HMM hits that are over 40% similar to these sequences will be scored as moderate confidence.)

GBUA_PSEAE / Q9I3S3 Guanidinobutyrase; EC 3.5.3.7 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I3S3 guanidinobutyrase subunit (EC 3.5.3.7) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Arginase
319 amino acids: PaperBLAST, CDD

SEPBH_THET8 / Q5SJ85 N(1)-aminopropylagmatine ureohydrolase; Protein SpeB homolog; EC 3.5.3.24 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Q5SJ85 N1-aminopropylagmatine ureohydrolase (EC 3.5.3.24) from Thermus thermophilus
Q5SJ85 aminopropylagmatine ureohydrolase (EC 3.5.3.24) from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
PFams: Arginase
293 amino acids: PaperBLAST, CDD

GPUA_PSEAE / Q9I6K2 Guanidinopropionase; EC 3.5.3.17 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6K2 Guanidinopropionase (EC 3.5.3.17) from Pseudomonas aeruginosa
PFams: Arginase
318 amino acids: PaperBLAST, CDD

Q8KZT5 D-arginase (EC 3.5.3.10); guanidinobutyrase (EC 3.5.3.7) from Arthrobacter sp.
Q8KZT5 guanidinobutyrase subunit (EC 3.5.3.7) from Arthrobacter sp. (strain KUJ 8602)
PFams: Arginase
353 amino acids: PaperBLAST, CDD

Q88EE2 guanidinobutyrase subunit (EC 3.5.3.7) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: Arginase
320 amino acids: PaperBLAST, CDD

SPEBH_THET2 / Q72JK8 N(1)-aminopropylagmatine ureohydrolase; Protein SpeB homolog; EC 3.5.3.24 from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: Arginase
293 amino acids: PaperBLAST, CDD

PAH_STRCL / P0DJQ3 Proclavaminate amidinohydrolase; Proclavaminic acid amidino hydrolase; EC 3.5.3.22 from Streptomyces clavuligerus
P0DJQ3 proclavaminate amidino hydrolase subunit (EC 3.5.3.22) from Streptomyces clavuligerus
PFams: Arginase
313 amino acids: PaperBLAST, CDD