GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for aatJ (aspartate/asparagine ABC transporter, substrate-binding component AatJ) in L-asparagine catabolism

Or see other characterized proteins similar to aatJ

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Or cluster curated proteins matching a keyword

Definition of aatJ

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 302-306 amino acids (heteromeric)

The first sequence in each cluster is the seed.

b0655 glutamate/aspartate ABC transporter periplasmic binding protein (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655
P37902 glutamate/aspartate ABC transporter periplasmic binding protein (EC 7.4.2.1) from Escherichia coli (strain K12)
GLTI_ECOLI / P37902 Glutamate/aspartate import solute-binding protein from Escherichia coli (strain K12)
TC 3.A.1.3.4 / P37902 YBEJ aka GltI aka B0655, component of Glutamate/aspartate porter from Escherichia coli
GB|BAA35307.2 glutamate-aspartate periplasmic-binding protein from Escherichia coli K12
PFams: SBP_bac_3
Heteromeric, 302 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.3.19 / Q88NY2 PP1071, component of Acidic amino acid uptake porter, AatJMQP from Pseudomonas putida (strain KT2440)
PFams: SBP_bac_3
Heteromeric, 306 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_4770 ABC transporter for L-Asparagine and possibly other L-amino acids, periplasmic substrate-binding component from Pseudomonas fluorescens GW456-L13
PFams: SBP_bac_3
Heteromeric, 304 amino acids: PaperBLAST, CDD, Compare to cluster

Pf1N1B4_771 ABC transporter for L-asparagine and L-glutamate, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N1B4
PFams: SBP_bac_3, NMT1
Heteromeric, 304 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_16290 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E3
PFams: SBP_bac_3, NMT1
Heteromeric, 304 amino acids: PaperBLAST, CDD, Compare to cluster