GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to aatM

Finding the characterized proteins for aatM (aspartate/asparagine ABC transporter, permease component 2 (AatM)) in L-asparagine catabolism

Or see clustering for step aatM

Or see all steps for L-asparagine catabolism

Or cluster curated proteins matching a keyword

Definition of aatM

Fetched 5 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 2 other characterized sequences. (Found 7 hits including self hits.)

Removing ignored items reduces this to 1 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for aatM.)

TC 3.A.1.3.17 / Q8YSA2 Basic amino acid uptake transporter, BgtAB
PFams: SBP_bac_3, Lig_chan-Glu_bd, BPD_transp_1
501 amino acids: PaperBLAST, CDD, TCDB::Q8YSA2
40% identical to

b0653 glutamate/aspartate ABC transporter membrane subunit GltK (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655
GLTK_ECOLI / P0AER5 Glutamate/aspartate import permease protein GltK from Escherichia coli (strain K12)
TC 3.A.1.3.4 / P0AER5 Glutamate/aspartate transport system permease protein GltK aka B0653, component of Glutamate/aspartate porter from Escherichia coli
P0AER5 glutamate/aspartate ABC transporter membrane subunit GltK (EC 7.4.2.1) from Escherichia coli (strain K12)
PFams: BPD_transp_1
Heteromeric, 224 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for aatM.)

TC 3.A.1.3.22 / Q9I404 Amino acid ABC transporter membrane protein, component of Amino acid transporter, AatJMQP. Probably transports L-glutamic acid, D-glutamine acid, L-glutamine and N-acetyl L-glutamic acid (Johnson et al. 2008). Very similar to 3.A.1.3.19 of P. putida from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
PFams: BPD_transp_1
Heteromeric, 222 amino acids: PaperBLAST, CDD, TCDB::Q9I404
84% identical to

TC 3.A.1.3.19 / Q88NY4 PP1069, component of Acidic amino acid uptake porter, AatJMQP from Pseudomonas putida (strain KT2440)
PFams: BPD_transp_1
Heteromeric, 223 amino acids: PaperBLAST, CDD