GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for aatM (aspartate/asparagine ABC transporter, permease component 2 (AatM)) in L-asparagine catabolism

Or see other characterized proteins similar to aatM

Or see all steps for L-asparagine catabolism

Or cluster curated proteins matching a keyword

Definition of aatM

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Escherichia coli

b0653 glutamate/aspartate ABC transporter membrane subunit GltK (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655
GLTK_ECOLI / P0AER5 Glutamate/aspartate import permease protein GltK from Escherichia coli (strain K12)
TC 3.A.1.3.4 / P0AER5 Glutamate/aspartate transport system permease protein GltK aka B0653, component of Glutamate/aspartate porter from Escherichia coli
P0AER5 glutamate/aspartate ABC transporter membrane subunit GltK (EC 7.4.2.1) from Escherichia coli (strain K12)
PFams: BPD_transp_1
Heteromeric, 224 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas fluorescens

PfGW456L13_4772 ABC transporter for L-Asparagine and possibly other L-amino acids, permease component 2 from Pseudomonas fluorescens GW456-L13
PFams: BPD_transp_1
Heteromeric, 223 amino acids: PaperBLAST, CDD (Cluster 1)

Pf1N1B4_773 ABC transporter for L-asparagine and L-glutamate, permease subunit 2 from Pseudomonas fluorescens FW300-N1B4
PFams: BPD_transp_1
Heteromeric, 223 amino acids: PaperBLAST, CDD (Cluster 1)

AO353_16280 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 1 from Pseudomonas fluorescens FW300-N2E3
PFams: BPD_transp_1
Heteromeric, 223 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas putida

TC 3.A.1.3.19 / Q88NY4 PP1069, component of Acidic amino acid uptake porter, AatJMQP from Pseudomonas putida (strain KT2440)
PFams: BPD_transp_1
Heteromeric, 223 amino acids: PaperBLAST, CDD (Cluster 1)