Clusters of Characterized Proteins

Clustering the characterized proteins for aatP (aspartate/asparagine ABC transporter, ATPase component) in L-asparagine catabolism

Or see other characterized proteins similar to aatP

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Definition of aatP

• Curated sequence Q88NY5: PP1068, component of Acidic amino acid uptake porter, AatJMQP
• Curated sequence AO353_16275: ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, ATPase component
• Curated sequence PfGW456L13_4773: ABC transporter for L-Asparagine and possibly other L-amino acids, putative ATPase component
• Curated sequence Pf1N1B4_774: ABC transporter for L-asparagine and L-glutamate, ATPase component
• Ignore hits to Q9I405 when looking for 'other' hits (Amino acid ABC transporter ATP binding protein, component of Amino acid transporter, AatJMQP. Probably transports L-glutamic acid, D-glutamine acid, L-glutamine and N-acetyl L-glutamic acid (Johnson et al. 2008). Very similar to 3.A.1.3.19 of P. putida)
• Curated sequence P0AAG3: Glutamate/aspartate transport ATP-binding protein GltL aka B0652, component of Glutamate/aspartate porter. glutamate/aspartate ABC transporter ATP binding subunit (EC 7.4.2.1). glutamate/aspartate ABC transporter ATP binding subunit (EC 7.4.2.1)
• Comment: aatP = PP1068 or AO353_16275 or gltL

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 241-256 amino acids (heteromeric)

b0652 glutamate/aspartate ABC transporter ATP binding subunit (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655
P0AAG3 glutamate/aspartate ABC transporter ATP binding subunit (EC 7.4.2.1) from Escherichia coli (strain K12)
TC 3.A.1.3.4 / P0AAG3 Glutamate/aspartate transport ATP-binding protein GltL aka B0652, component of Glutamate/aspartate porter from Escherichia coli
PFams: ABC_tran
Heteromeric, 241 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.3.19 / Q88NY5 PP1068, component of Acidic amino acid uptake porter, AatJMQP from Pseudomonas putida (strain KT2440)
PFams: ABC_tran
Heteromeric, 256 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_4773 ABC transporter for L-Asparagine and possibly other L-amino acids, putative ATPase component from Pseudomonas fluorescens GW456-L13
PFams: ABC_tran
Heteromeric, 244 amino acids: PaperBLAST, CDD, Compare to cluster

Pf1N1B4_774 ABC transporter for L-asparagine and L-glutamate, ATPase component from Pseudomonas fluorescens FW300-N1B4
PFams: ABC_tran
Heteromeric, 244 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_16275 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, ATPase component from Pseudomonas fluorescens FW300-N2E3
PFams: ABC_tran
Heteromeric, 244 amino acids: PaperBLAST, CDD, Compare to cluster