GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for natH (aspartate ABC transporter, permease component 2 (NatH)) in L-asparagine catabolism

Or see other characterized proteins similar to natH

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Or cluster curated proteins matching a keyword

Definition of natH

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 381-396 amino acids (1/2 heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.3.18 / Q8YPM7 NatH, component of Acidic and neutral amino acid uptake transporter NatFGH/BgtA. BgtA is shared with BgtAB
PFams: BPD_transp_1
Heteromeric, 381 amino acids: PaperBLAST, CDD, Compare to cluster

Q31RN9 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
396 amino acids: PaperBLAST, CDD, Compare to cluster