GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to aapQ

Finding the characterized proteins for aapQ (ABC transporter for amino acids (Asp/Asn/Glu/Pro/Leu), permease component 1 (AapQ)) in L-aspartate catabolism

Or see clustering for step aapQ

Or see all steps for L-aspartate catabolism

Or cluster curated proteins matching a keyword

Definition of aapQ

Fetched 1 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 3 other characterized sequences. (Found 4 hits including self hits.)

Removing ignored items reduces this to 2 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for aapQ.)

Pf6N2E2_5403 ABC transporter for D-Alanine, permease component 2 from Pseudomonas fluorescens FW300-N2E2
PFams: BPD_transp_1
Heteromeric, 375 amino acids: PaperBLAST, CDD, reanno::pseudo6_N2E2:Pf6N2E2_5403
50% identical to

TC 3.A.1.3.8 / Q52813 AapQ, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) from Rhizobium leguminosarum (biovar viciae)
PFams: BPD_transp_1
Heteromeric, 400 amino acids: PaperBLAST, CDD

TC 3.A.1.3.7 / Q52664 BztB, component of Glutamate/glutamine/aspartate/asparagine porter from Rhodobacter capsulatus (Rhodopseudomonas capsulata)
GB|AAB17887.1 glutamate/glutamine/aspartate/asparagine transport system permease protein BztB from Rhodobacter capsulatus
PFams: BPD_transp_1
Heteromeric, 426 amino acids: PaperBLAST, CDD, CharProtDB::CH_011913
40% identical to

TC 3.A.1.3.8 / Q52813 AapQ, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) from Rhizobium leguminosarum (biovar viciae)
PFams: BPD_transp_1
Heteromeric, 400 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for aapQ.)

SMc02119 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, permease component 1 from Sinorhizobium meliloti 1021
PFams: BPD_transp_1
Heteromeric, 397 amino acids: PaperBLAST, CDD, reanno::Smeli:SMc02119
68% identical to

TC 3.A.1.3.8 / Q52813 AapQ, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) from Rhizobium leguminosarum (biovar viciae)
PFams: BPD_transp_1
Heteromeric, 400 amino acids: PaperBLAST, CDD