Other Characterized Proteins Similar to TM0027

GapMind for catabolism of small carbon sources

Other Characterized Proteins Similar to TM0027

Finding the characterized proteins for TM0027 (cellobiose ABC transporter, ATPase component 2) in D-cellobiose catabolism

Or see clustering for step TM0027

Or see all steps for D-cellobiose catabolism

Or cluster curated proteins matching a keyword

Definition of TM0027

Curated sequence Q9WXN4: TM0027, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR
Ignore hits to Q9X0U6 when looking for 'other' hits (TM1219, component of Probable cellobiose porter. Induced by barley, glucomannan)

Fetched 1 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 10 other characterized sequences. (Found 11 hits including self hits.)

Removing ignored items reduces this to 9 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for TM0027.)

TC 3.A.1.5.13 / Q9WXT0 TM0075, component of Probable xylan oligosaccharide porter (Conners et al., 2005). Induced by xylan and xylose. Regulated by xylose-responsive regulator XylR
PFams: ABC_tran, oligo_HPY
Heteromeric, 320 amino acids: PaperBLAST, CDD, TCDB::Q9WXT0
49% identical to

TC 3.A.1.5.16 / Q9WXN4 TM0027, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR
PFams: ABC_tran
Heteromeric, 268 amino acids: PaperBLAST, CDD

TC 3.A.1.5.29 / Q9WXR3 Oligopeptide ABC transporter, ATP-binding protein, component of Probable xylan oligosaccharide porter (Conners et al. 2005). Induced by cylan and xylose. Regulated by xylose-responsive regulator XylR from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: ABC_tran, oligo_HPY
Heteromeric, 338 amino acids: PaperBLAST, CDD, TCDB::Q9WXR3
43% identical to

TC 3.A.1.5.15 / Q9X272 TM1750, component of Probable mannose/mannoside porter. Induced by beta-mannan (Conners et al., 2005). Regulated by mannose-responsive regulator manR
PFams: ABC_tran, oligo_HPY
Heteromeric, 328 amino acids: PaperBLAST, CDD, TCDB::Q9X272
43% identical to

TC 3.A.1.5.12 / Q9X0F3 TM1063, component of Probable rhamnose oligosaccharide porter. Induced by rhamnose
PFams: ABC_tran, oligo_HPY
Heteromeric, 341 amino acids: PaperBLAST, CDD, TCDB::Q9X0F3
41% identical to

TC 3.A.1.5.8 / Q97UG5 MalK, component of Maltose and maltooligosaccharide porter from Sulfolobus solfataricus
PFams: ABC_tran, oligo_HPY, ABC_tran, oligo_HPY
Heteromeric, 617 amino acids: PaperBLAST, CDD, TCDB::Q97UG5
40% identical to

TC 3.A.1.5.19 / Q2FZR4 OppF, component of The major oligopeptide uptake porter, Opp-3 (of four paralogues, this is the only one that mediates nitrogen nutrition from Staphylococcus aureus (strain NCTC 8325)
PFams: ABC_tran, oligo_HPY
Heteromeric, 313 amino acids: PaperBLAST, CDD, TCDB::Q2FZR4
41% identical to

TC 3.A.1.5.18 / O31310 OppF, component of The oligopeptide transporter OppA1-5, B1, C1, DF (functions with five binding proteins of differing induction properties and peptide specificities; OppA1-3 are chromosomally encoded; OppA4 and 5 are plasmid encoded.) from Borrelia burgdorferi (Lyme disease spirochete)
PFams: ABC_tran, oligo_HPY
Heteromeric, 323 amino acids: PaperBLAST, CDD, TCDB::O31310
41% identical to

TC 3.A.1.5.25 / Q9CIK8 Oligopeptide ABC trasporter ATP binding protein, component of The ABC peptide/signalling peptide transporter. OptA binds peptides of 3-6 aas; OptS binds dipeptides. OptB,C,D are most similar to 3.A.1.5.19 from Lactococcus lactis subsp. lactis
PFams: ABC_tran, oligo_HPY
Heteromeric, 313 amino acids: PaperBLAST, CDD, TCDB::Q9CIK8
40% identical to

b0829 glutathione ABC transporter ATP binding subunit GsiA (EC 7.4.2.10) from Escherichia coli K-12 substr. MG1655
P75796 glutathione ABC transporter ATP binding subunit GsiA (EC 7.4.2.10) from Escherichia coli (strain K12)
GSIA_ECOLI / P75796 Glutathione import ATP-binding protein GsiA; EC 7.4.2.10 from Escherichia coli (strain K12)
TC 3.A.1.5.11 / P75796 Hypothetical ABC transporter ATP-binding protein yliA, component of Glutathione porter, YliABCD or GsiABCD from Escherichia coli
PFams: ABC_tran, oligo_HPY, ABC_tran, oligo_HPY
Heteromeric, 623 amino acids: PaperBLAST, CDD, SwissProt::P75796
40% identical to

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for TM0027.)

TC 3.A.1.5.14 / Q9X0U6 TM1219, component of Probable cellobiose porter. Induced by barley, glucomannan
PFams: ABC_tran, oligo_HPY
Heteromeric, 315 amino acids: PaperBLAST, CDD, TCDB::Q9X0U6
51% identical to