GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to TM0027

Finding the characterized proteins for TM0027 (cellobiose ABC transporter, ATPase component 2) in D-cellobiose catabolism

Or see clustering for step TM0027

Or see all steps for D-cellobiose catabolism

Or cluster curated proteins matching a keyword

Definition of TM0027

Fetched 1 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 10 other characterized sequences. (Found 11 hits including self hits.)

Removing ignored items reduces this to 9 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for TM0027.)

TC 3.A.1.5.13 / Q9WXT0 TM0075, component of Probable xylan oligosaccharide porter (Conners et al., 2005). Induced by xylan and xylose. Regulated by xylose-responsive regulator XylR
PFams: ABC_tran, oligo_HPY
Heteromeric, 320 amino acids: PaperBLAST, CDD, TCDB::Q9WXT0
49% identical to

TC 3.A.1.5.16 / Q9WXN4 TM0027, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR
PFams: ABC_tran
Heteromeric, 268 amino acids: PaperBLAST, CDD

TC 3.A.1.5.29 / Q9WXR3 Oligopeptide ABC transporter, ATP-binding protein, component of Probable xylan oligosaccharide porter (Conners et al. 2005). Induced by cylan and xylose. Regulated by xylose-responsive regulator XylR from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: ABC_tran, oligo_HPY
Heteromeric, 338 amino acids: PaperBLAST, CDD, TCDB::Q9WXR3
43% identical to

TC 3.A.1.5.16 / Q9WXN4 TM0027, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR
PFams: ABC_tran
Heteromeric, 268 amino acids: PaperBLAST, CDD

TC 3.A.1.5.15 / Q9X272 TM1750, component of Probable mannose/mannoside porter. Induced by beta-mannan (Conners et al., 2005). Regulated by mannose-responsive regulator manR
PFams: ABC_tran, oligo_HPY
Heteromeric, 328 amino acids: PaperBLAST, CDD, TCDB::Q9X272
43% identical to

TC 3.A.1.5.16 / Q9WXN4 TM0027, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR
PFams: ABC_tran
Heteromeric, 268 amino acids: PaperBLAST, CDD

TC 3.A.1.5.12 / Q9X0F3 TM1063, component of Probable rhamnose oligosaccharide porter. Induced by rhamnose
PFams: ABC_tran, oligo_HPY
Heteromeric, 341 amino acids: PaperBLAST, CDD, TCDB::Q9X0F3
41% identical to

TC 3.A.1.5.16 / Q9WXN4 TM0027, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR
PFams: ABC_tran
Heteromeric, 268 amino acids: PaperBLAST, CDD

TC 3.A.1.5.8 / Q97UG5 MalK, component of Maltose and maltooligosaccharide porter from Sulfolobus solfataricus
PFams: ABC_tran, oligo_HPY, ABC_tran, oligo_HPY
Heteromeric, 617 amino acids: PaperBLAST, CDD, TCDB::Q97UG5
40% identical to

TC 3.A.1.5.16 / Q9WXN4 TM0027, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR
PFams: ABC_tran
Heteromeric, 268 amino acids: PaperBLAST, CDD

TC 3.A.1.5.19 / Q2FZR4 OppF, component of The major oligopeptide uptake porter, Opp-3 (of four paralogues, this is the only one that mediates nitrogen nutrition from Staphylococcus aureus (strain NCTC 8325)
PFams: ABC_tran, oligo_HPY
Heteromeric, 313 amino acids: PaperBLAST, CDD, TCDB::Q2FZR4
41% identical to

TC 3.A.1.5.16 / Q9WXN4 TM0027, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR
PFams: ABC_tran
Heteromeric, 268 amino acids: PaperBLAST, CDD

TC 3.A.1.5.18 / O31310 OppF, component of The oligopeptide transporter OppA1-5, B1, C1, DF (functions with five binding proteins of differing induction properties and peptide specificities; OppA1-3 are chromosomally encoded; OppA4 and 5 are plasmid encoded.) from Borrelia burgdorferi (Lyme disease spirochete)
PFams: ABC_tran, oligo_HPY
Heteromeric, 323 amino acids: PaperBLAST, CDD, TCDB::O31310
41% identical to

TC 3.A.1.5.16 / Q9WXN4 TM0027, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR
PFams: ABC_tran
Heteromeric, 268 amino acids: PaperBLAST, CDD

TC 3.A.1.5.25 / Q9CIK8 Oligopeptide ABC trasporter ATP binding protein, component of The ABC peptide/signalling peptide transporter. OptA binds peptides of 3-6 aas; OptS binds dipeptides. OptB,C,D are most similar to 3.A.1.5.19 from Lactococcus lactis subsp. lactis
PFams: ABC_tran, oligo_HPY
Heteromeric, 313 amino acids: PaperBLAST, CDD, TCDB::Q9CIK8
40% identical to

TC 3.A.1.5.16 / Q9WXN4 TM0027, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR
PFams: ABC_tran
Heteromeric, 268 amino acids: PaperBLAST, CDD

b0829 glutathione ABC transporter ATP binding subunit GsiA (EC 7.4.2.10) from Escherichia coli K-12 substr. MG1655
GSIA_ECOLI / P75796 Glutathione import ATP-binding protein GsiA; EC 7.4.2.10 from Escherichia coli (strain K12)
TC 3.A.1.5.11 / P75796 Hypothetical ABC transporter ATP-binding protein yliA, component of Glutathione porter, YliABCD or GsiABCD from Escherichia coli
P75796 glutathione ABC transporter ATP binding subunit GsiA (EC 7.4.2.10) from Escherichia coli (strain K12)
PFams: ABC_tran, oligo_HPY, ABC_tran, oligo_HPY
Heteromeric, 623 amino acids: PaperBLAST, CDD, SwissProt::P75796
40% identical to

TC 3.A.1.5.16 / Q9WXN4 TM0027, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR
PFams: ABC_tran
Heteromeric, 268 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for TM0027.)

TC 3.A.1.5.14 / Q9X0U6 TM1219, component of Probable cellobiose porter. Induced by barley, glucomannan
PFams: ABC_tran, oligo_HPY
Heteromeric, 315 amino acids: PaperBLAST, CDD, TCDB::Q9X0U6
51% identical to

TC 3.A.1.5.16 / Q9WXN4 TM0027, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR
PFams: ABC_tran
Heteromeric, 268 amino acids: PaperBLAST, CDD