Other Characterized Proteins Similar to TM0028

GapMind for catabolism of small carbon sources

Other Characterized Proteins Similar to TM0028

Finding the characterized proteins for TM0028 (cellobiose ABC transporter, ATPase component 1) in D-cellobiose catabolism

Or see clustering for step TM0028

Or see all steps for D-cellobiose catabolism

Or cluster curated proteins matching a keyword

Definition of TM0028

Curated sequence Q9WXN5: TM0028, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR
Ignore hits to Q9X0U7 when looking for 'other' hits (TM1220, component of Probable cellobiose porter. Induced by barley, glucomannan)

Fetched 1 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 7 other characterized sequences. (Found 8 hits including self hits.)

Removing ignored items reduces this to 6 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for TM0028.)

TC 3.A.1.5.15 / Q9X271 TM1749, component of Probable mannose/mannoside porter. Induced by beta-mannan (Conners et al., 2005). Regulated by mannose-responsive regulator manR
PFams: ABC_tran, oligo_HPY
Heteromeric, 324 amino acids: PaperBLAST, CDD, TCDB::Q9X271
44% identical to

TC 3.A.1.5.16 / Q9WXN5 TM0028, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR
PFams: ABC_tran, oligo_HPY
Heteromeric, 330 amino acids: PaperBLAST, CDD

TC 3.A.1.5.13 / Q9WXS9 TM0074, component of Probable xylan oligosaccharide porter (Conners et al., 2005). Induced by xylan and xylose. Regulated by xylose-responsive regulator XylR
PFams: ABC_tran, oligo_HPY
Heteromeric, 332 amino acids: PaperBLAST, CDD, TCDB::Q9WXS9
43% identical to

TC 3.A.1.5.12 / Q9X0F4 TM1064, component of Probable rhamnose oligosaccharide porter. Induced by rhamnose
PFams: ABC_tran, oligo_HPY
Heteromeric, 332 amino acids: PaperBLAST, CDD, TCDB::Q9X0F4
41% identical to

TC 3.A.1.5.29 / Q9WXR4 Oligopeptide ABC transporter, ATP-binding protein, component of Probable xylan oligosaccharide porter (Conners et al. 2005). Induced by cylan and xylose. Regulated by xylose-responsive regulator XylR from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: ABC_tran, oligo_HPY
Heteromeric, 331 amino acids: PaperBLAST, CDD, TCDB::Q9WXR4
40% identical to

A0A150QXP6 5-(carboxyamino)imidazole ribonucleotide mutase (EC 5.4.99.18) from Bacillus anthracis
PFams: ABC_tran, AAA_21, oligo_HPY
319 amino acids: PaperBLAST, CDD, BRENDA::A0A150QXP6
41% identical to

TC 3.A.1.5.20 / P42064 AppD, component of 5-6 amino acyl oligopeptide transporter AppA-F from Bacillus subtilis
PFams: ABC_tran, oligo_HPY
Heteromeric, 328 amino acids: PaperBLAST, CDD, TCDB::P42064
40% identical to

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for TM0028.)

TC 3.A.1.5.14 / Q9X0U7 TM1220, component of Probable cellobiose porter. Induced by barley, glucomannan
PFams: ABC_tran, oligo_HPY
Heteromeric, 326 amino acids: PaperBLAST, CDD, TCDB::Q9X0U7
40% identical to