GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gadh3 (gluconate 2-dehydrogenase subunit 3) in D-cellobiose catabolism

Or see other characterized proteins similar to gadh3

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Definition of gadh3

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 220-251 amino acids (2/3 heteromeric)

The first sequence in each cluster is the seed.

GADH3_PANCY / O34213 Gluconate 2-dehydrogenase subunit 3; GA 2-DH subunit 3; GADH subunit 3; EC 1.1.99.3 from Pantoea cypripedii (Pectobacterium cypripedii) (Erwinia cypripedii)
O34213 gluconate 2-dehydrogenase subunit 3 (EC 1.1.99.3) from Pantoea cypripedii
PFams: Gluconate_2-dh3
Heteromeric, 220 amino acids: PaperBLAST, CDD, Compare to cluster

A4PIA9 Gluconate 2-dehydrogenase small subunit
242 amino acids: PaperBLAST, CDD, Compare to cluster

Q4KKM8 D-gluconate dehydrogenase 21.7 kD subunit (EC 1.1.99.3) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
PFams: Gluconate_2-dh3
Heteromeric, 251 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

Q5FRK3 Gluconate 2-dehydrogenase gamma chain; EC=1.1.99.3
236 amino acids: PaperBLAST, CDD
(similar to UniProt::A4PIA9 from Cluster 1, but similarity to seed sequence is below thresholds)