GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to acn

Finding the characterized proteins for acn (aconitase) in citrate catabolism

Or see clustering for step acn

Or see all steps for citrate catabolism

Or cluster curated proteins matching a keyword

Definition of acn

Fetched 52 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 9 other characterized sequences. (Found 61 hits including self hits.)

Removing ignored items reduces this to 5 close sequences.

There are also 4 HMM-only high-coverage hits.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for acn.)

PRPD1_CORGL / Q8NSH9 2-methylcitrate dehydratase 1; 2-MC dehydratase; EC 4.2.1.79 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
PFams: MmgE_PrpD
498 amino acids: PaperBLAST, CDD, SwissProt::Q8NSH9
73% identical to

PRPD2_CORGL / Q8NSL3 2-methylcitrate dehydratase 2; 2-MC dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
PFams: MmgE_PrpD
504 amino acids: PaperBLAST, CDD

PRPD_YARLI / Q6C354 2-methylcitrate dehydratase, mitochondrial; EC 4.2.1.79 from Yarrowia lipolytica (strain CLIB 122 / E 150) (Yeast) (Candida lipolytica)
PFams: MmgE_PrpD
520 amino acids: PaperBLAST, CDD, SwissProt::Q6C354
64% identical to

PRPD_CUPNE / Q937N6 2-methylcitrate dehydratase; 2-MC dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Cupriavidus necator (Alcaligenes eutrophus) (Ralstonia eutropha)
PFams: MmgE_PrpD
484 amino acids: PaperBLAST, CDD

MMGE_BACSU / P45859 Citrate/2-methylcitrate dehydratase; EC 4.2.1.- from Bacillus subtilis (strain 168)
P45859 2-methylcitrate dehydratase (EC 4.2.1.79) from Bacillus subtilis
PFams: MmgE_PrpD
472 amino acids: PaperBLAST, CDD, SwissProt::P45859
61% identical to

b0334 2-methylcitrate dehydratase (EC 4.2.1.79) from Escherichia coli K-12 substr. MG1655
P77243 2-methylcitrate dehydratase (EC 4.2.1.79) from Escherichia coli (strain K12)
PRPD_ECOLI / P77243 2-methylcitrate dehydratase; 2-MC dehydratase; (2S,3S)-2-methylcitrate dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Escherichia coli (strain K12)
P77243 2-methylcitrate dehydratase (EC 4.2.1.79) from Escherichia coli
PDB|1SZQ 2-methylcitrate dehydratase; EC 4.2.1.79 from Escherichia coli K12
PFams: MmgE_PrpD
483 amino acids: PaperBLAST, CDD

PRPD_YEAST / Q12428 Probable 2-methylcitrate dehydratase; 2-MC dehydratase; (2S,3S)-2-methylcitrate dehydratase; EC 4.2.1.79 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: MmgE_PrpD
516 amino acids: PaperBLAST, CDD, SwissProt::Q12428
60% identical to

PRPD_CUPNE / Q937N6 2-methylcitrate dehydratase; 2-MC dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Cupriavidus necator (Alcaligenes eutrophus) (Ralstonia eutropha)
PFams: MmgE_PrpD
484 amino acids: PaperBLAST, CDD

Ac3H11_1140 2-methylisocitrate dehydratase (EC 4.2.1.99) from Acidovorax sp. GW101-3H11
PFams: Aconitase, Aconitase_C
980 amino acids: PaperBLAST, CDD, reanno::acidovorax_3H11:Ac3H11_1140
51% identical to

HP15_3433 Aconitate hydratase (EC 4.2.1.3) from Marinobacter adhaerens HP15
PFams: Aconitase, Aconitase_C
919 amino acids: PaperBLAST, CDD

HMM-only sequences

(Since these sequences' annotations are outside the definition for acn, HMM hits that are over 40% similar to these sequences will be scored as moderate confidence.)

IREB2_MOUSE / Q811J3 Iron-responsive element-binding protein 2; IRE-BP 2; Iron regulatory protein 2; IRP2 from Mus musculus (Mouse)
PFams: Aconitase, Aconitase, Aconitase_C
963 amino acids: PaperBLAST, CDD

Q4JFF1 phosphinomethylmalate isomerase (EC 4.2.1.166) from Streptomyces viridochromogenes
PFams: Aconitase, Aconitase_C
889 amino acids: PaperBLAST, CDD

A0A0M3N196 phosphinomethylmalate isomerase (EC 4.2.1.166) from Kitasatospora phosalacinea
PFams: Aconitase, Aconitase_C
882 amino acids: PaperBLAST, CDD

IREB2_HUMAN / P48200 Iron-responsive element-binding protein 2; IRE-BP 2; Iron regulatory protein 2; IRP2 from Homo sapiens (Human)
PFams: Aconitase, Aconitase, Aconitase_C
963 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for acn.)

O74699 aconitase from Aspergillus terreus
PFams: Aconitase, Aconitase_C
778 amino acids: PaperBLAST, CDD, metacyc::MONOMER-13634
93% identical to

ACON_ASPFU / Q4WLN1 Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; Homocitrate dehydratase; EC 4.2.1.3; EC 4.2.1.- from Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (Aspergillus fumigatus)
PFams: Aconitase, Aconitase_C
787 amino acids: PaperBLAST, CDD

ACON2_YEAST / P39533 Homocitrate dehydratase, mitochondrial; Aconitase 2; EC 4.2.1.- from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: Aconitase, Aconitase_C
789 amino acids: PaperBLAST, CDD, SwissProt::P39533
55% identical to

ACON_YEAST / P19414 Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
P19414 aconitate hydratase (EC 4.2.1.3) from Saccharomyces cerevisiae
PFams: Aconitase, Aconitase_C
778 amino acids: PaperBLAST, CDD

ACON2_ASPFU / Q4WJ90 Putative aconitate hydratase, mitochondrial; Aconitase 2; EC 4.2.1.- from Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (Aspergillus fumigatus)
PFams: Aconitase, Aconitase_C
799 amino acids: PaperBLAST, CDD, SwissProt::Q4WJ90
63% identical to

ACON2_SCHPO / Q9P7D4 Homocitrate dehydratase, mitochondrial; Aconitase 2; EC 4.2.1.- from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Q9P7D4 aconitate hydratase (EC 4.2.1.3) from Schizosaccharomyces pombe
PFams: Aconitase, Aconitase_C, Ribosomal_L21p
918 amino acids: PaperBLAST, CDD

ACON2_EMENI / Q5B6D6 Putative aconitate hydratase, mitochondrial; Aconitase 2; EC 4.2.1.- from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans)
PFams: Aconitase, Aconitase_C
796 amino acids: PaperBLAST, CDD, SwissProt::Q5B6D6
54% identical to

Q8RP87 aconitate hydratase (EC 4.2.1.3) from Bacteroides fragilis
PFams: Aconitase, Aconitase_C
747 amino acids: PaperBLAST, CDD