GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for citA (citrate:H+ symporter CitA) in citrate catabolism

Or see other characterized proteins similar to citA

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Or cluster curated proteins matching a keyword

Definition of citA

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 431-444 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

GB|AAA88472.1 citrate transporter from Escherichia coli
PFams: Sugar_tr, MFS_1, Sugar_tr
431 amino acids: PaperBLAST, CDD, Compare to cluster

CITA_SALTY / P0A2G3 Citrate-proton symporter; Citrate carrier protein; Citrate transporter; Citrate utilization determinant; Citrate utilization protein A from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
TC 2.A.1.6.7 / P0A2G3 The citrate/tricarballylate:H+ symporter (CitA or TcuC); probably orthologous to 2.A.1.6.1 from Salmonella typhimurium
PFams: Sugar_tr, MFS_1, Sugar_tr
434 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.1.6.1 / P16482 Citrate:H+ symporter from Klebsiella pneumoniae
PFams: Sugar_tr, MFS_1, Sugar_tr, MFS_1
444 amino acids: PaperBLAST, CDD, Compare to cluster