GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for citE (citrate lyase, citryl-ACP lyase component CitE) in citrate catabolism

Or see other characterized proteins similar to citE

Or see all steps for citrate catabolism

Or cluster curated proteins matching a keyword

Definition of citE

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 289-302 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q037K5 citrate (pro-3S)-lyase (EC 4.1.3.6) from Lactobacillus casei
PFams: HpcH_HpaI, C-C_Bond_Lyase
292 amino acids: PaperBLAST, CDD, Compare to cluster

b0616 citrate lyase β subunit from Escherichia coli K-12 substr. MG1655
CITE_ECOLI / P0A9I1 Citrate lyase subunit beta; Citrase beta chain; Citrate (pro-3S)-lyase subunit beta; Citryl-CoA lyase subunit; EC 4.1.3.6; EC 4.1.3.34 from Escherichia coli (strain K12)
PFams: HpcH_HpaI, C-C_Bond_Lyase
302 amino acids: PaperBLAST, CDD, Compare to cluster

P17725 citrate lyase β subunit (EC 4.1.3.34) from Klebsiella pneumoniae
PFams: HpcH_HpaI
289 amino acids: PaperBLAST, CDD, Compare to cluster