GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for tctA (citrate/Na+ symporter, large transmembrane component TctA) in citrate catabolism

Or see other characterized proteins similar to tctA

Or see all steps for citrate catabolism

Or cluster curated proteins matching a keyword

Definition of tctA

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 504-510 amino acids (2/4 heteromeric)

The first sequence in each cluster is the seed.

TC 2.A.80.1.1 / Q9FA44 TctA, component of The tricarboxylate transporter, TctABC from Salmonella enterica
PFams: TctA
Heteromeric, 504 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.80.1.4 / S5Y5N9 Citrate uptake transporter, membrane subunit, component of Pmf-dependent citrate uptake porter, TctABC from Corynebacterium glutamicum MB001
PFams: TctA
Heteromeric, 510 amino acids: PaperBLAST, CDD, Compare to cluster

E4PJQ9 Tricarboxylic transport TctA
508 amino acids: PaperBLAST, CDD, Compare to cluster

Dshi_3121 Tricarboxylate transport membrane protein TctA from Dinoroseobacter shibae DFL-12
PFams: TctA
505 amino acids: PaperBLAST, CDD, Compare to cluster