Clusters of Characterized Proteins

Clustering the characterized proteins for AO353_03055 (ABC transporter for L-Citrulline, periplasmic substrate-binding component) in L-citrulline catabolism

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Definition of AO353_03055

• Curated sequence Pf1N1B4_3431: ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component
• Curated sequence AO353_03055: ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component
• Ignore hits to AO356_18700 when looking for 'other' hits (L-Arginine ABC transporter, periplasmic substrate-binding component)
• Ignore hits to Pf6N2E2_5660 when looking for 'other' hits (L-Arginine ABC transporter, periplasmic substrate-binding component)
• Ignore hits to GFF4245 when looking for 'other' hits (ABC transporter for L-Arginine, substrate-binding component)
• Ignore hits to O50181 when looking for 'other' hits (AotJ aka PA0888, component of Arginine/ornithine (but not lysine) porter)
• Comment: An ABC transporter for citrulline (and arginine) was identified in two strains of Pseudomonas fluorescens. It is closely related to arginine transporters from other Pseudomonas, which are marked ignore. It is also related to the arginine/ornithine/lysine transporter of Salmonella and E. coli, but citrulline is a poor substrate for the Salmonella system (PMID:1400387).

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 257-258 amino acids (heteromeric)

Pf1N1B4_3431 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N1B4
PFams: SBP_bac_3, Lig_chan-Glu_bd
Heteromeric, 257 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_03055 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E3
PFams: SBP_bac_3
Heteromeric, 258 amino acids: PaperBLAST, CDD, Compare to cluster