Other Characterized Proteins Similar to AO353

GapMind for catabolism of small carbon sources

Other Characterized Proteins Similar to AO353_03055

Finding the characterized proteins for AO353_03055 (ABC transporter for L-Citrulline, periplasmic substrate-binding component) in L-citrulline catabolism

Or see clustering for step AO353_03055

Or see all steps for L-citrulline catabolism

Or cluster curated proteins matching a keyword

Definition of AO353_03055

Curated sequence Pf1N1B4_3431: ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component
Curated sequence AO353_03055: ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component
Ignore hits to AO356_18700 when looking for 'other' hits (L-Arginine ABC transporter, periplasmic substrate-binding component)
Ignore hits to Pf6N2E2_5660 when looking for 'other' hits (L-Arginine ABC transporter, periplasmic substrate-binding component)
Ignore hits to GFF4245 when looking for 'other' hits (ABC transporter for L-Arginine, substrate-binding component)
Ignore hits to O50181 when looking for 'other' hits (AotJ aka PA0888, component of Arginine/ornithine (but not lysine) porter)
Comment: An ABC transporter for citrulline (and arginine) was identified in two strains of Pseudomonas fluorescens. It is closely related to arginine transporters from other Pseudomonas, which are marked ignore. It is also related to the arginine/ornithine/lysine transporter of Salmonella and E. coli, but citrulline is a poor substrate for the Salmonella system (PMID:1400387).

Fetched 2 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 15 other characterized sequences. (Found 17 hits including self hits.)

Removing ignored items reduces this to 11 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for AO353_03055.)

TC 3.A.1.3.23 / Q9HU31 Amino acid (Lysine/arginine/ornithine/histidine/octopine) ABC transporter periplasmic binding protein, component of Amino acid transporter, PA5152-PA5155. Probably transports numerous amino acids including lysine, arginine, histidine, D-alanine and D-valine (Johnson et al. 2008). Regulated by ArgR from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
PFams: SBP_bac_3, Lig_chan-Glu_bd
Heteromeric, 250 amino acids: PaperBLAST, CDD, TCDB::Q9HU31
46% identical to

AO353_03055 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E3
PFams: SBP_bac_3
Heteromeric, 258 amino acids: PaperBLAST, CDD

BPHYT_RS07735 ABC transporter for L-Arginine, periplasmic substrate-binding component from Burkholderia phytofirmans PsJN
PFams: SBP_bac_3, NMT1
Heteromeric, 264 amino acids: PaperBLAST, CDD, reanno::BFirm:BPHYT_RS07735
45% identical to

AO356_09900 ABC transporter for L-Lysine, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2C3
PFams: SBP_bac_3, Lig_chan-Glu_bd
Heteromeric, 251 amino acids: PaperBLAST, CDD, reanno::pseudo5_N2C3_1:AO356_09900
45% identical to

b2310 lysine/arginine/ornithine ABC transporter periplasmic binding protein (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655
TC 3.A.1.3.1 / TC 3.A.1.3.29 / P09551 ArgT aka B2310, component of Histidine/Arginine/Lysine (basic amino acid) uptake porter, HisJ/ArgT/HisP/HisM/HisQ [R, R, C, M, M, respectively] (Gilson et al. 1982). HisJ binds L-His (preferred), but 1-methyl-L-His and 3-methyl-L-His also bind, while the dipeptide carnosine binds weakly; D-histidine and the histidine degradation products, histamine, urocanic acid and imidazole do not bind. L-Arg, homo-L-Arg, and post-translationally modified methylated Arg-analogs also bind with the exception of symmetric dimethylated-L-Arg. L-Lys and L-Orn show weaker interactions with HisJ and methylated and acetylated Lys variants show poor binding.The carboxylate groups of these amino acids and their variants are essential from Escherichia coli
PFams: SBP_bac_3
Heteromeric, 260 amino acids: PaperBLAST, CDD, TCDB::P09551
44% identical to

Pf1N1B4_3431 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N1B4
PFams: SBP_bac_3, Lig_chan-Glu_bd
Heteromeric, 257 amino acids: PaperBLAST, CDD

ARGT_SALTY / P02911 Lysine/arginine/ornithine-binding periplasmic protein; LAO-binding protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
RF|NP_461297.1 lysine/arginine/ornithine ABC transporter, periplasmic lysine/arginine/ornithine-binding protein ArgT from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: SBP_bac_3
260 amino acids: PaperBLAST, CDD, CharProtDB::CH_003045
43% identical to

HISJ_SALTY / P02910 Histidine-binding periplasmic protein; HBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GB|AAV76512.1 histidine ABC transporter, periplasmic histidine-binding protein HisJ from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: SBP_bac_3
260 amino acids: PaperBLAST, CDD, CharProtDB::CH_018185
42% identical to

Pf6N2E2_2958 ABC transporter for L-Lysine, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E2
PFams: SBP_bac_3, NMT1
Heteromeric, 260 amino acids: PaperBLAST, CDD, reanno::pseudo6_N2E2:Pf6N2E2_2958
42% identical to

b2309 histidine ABC transporter periplasmic binding protein (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655
TC 3.A.1.3.29 / P0AEU0 Histidine-binding periplasmic protein, component of Histidine/Arginine/Lysine (basic amino acid) uptake porter, HisJ/ArgT/HisP/HisM/HisQ [R, R, C, M, M, respectively] (Gilson et al. 1982). HisJ binds L-His (preferred), but 1-methyl-L-His and 3-methyl-L-His also bind, while the dipeptide carnosine binds weakly; D-histidine and the histidine degradation products, histamine, urocanic acid and imidazole do not bind. L-Arg, homo-L-Arg, and post-translationally modified methylated Arg-analogs also bind with the exception of symmetric dimethylated-L-Arg. L-Lys and L-Orn show weaker interactions with HisJ and methylated and acetylated Lys variants show poor binding.The carboxylate groups of these amino acids and their variants are essential from Escherichia coli (strain K12)
GB|AAC75369.1 histidine ABC transporter, periplasmic histidine-binding protein HisJ from Escherichia coli
PFams: SBP_bac_3
Heteromeric, 260 amino acids: PaperBLAST, CDD, CharProtDB::CH_014295
42% identical to

AO356_05495 ABC transporter for L-Lysine, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2C3
PFams: SBP_bac_3, NMT1
Heteromeric, 260 amino acids: PaperBLAST, CDD, reanno::pseudo5_N2C3_1:AO356_05495
42% identical to

b0860 L-arginine ABC transporter periplasmic binding protein (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655
P30860 L-arginine ABC transporter periplasmic binding protein (EC 7.4.2.1) from Escherichia coli (strain K12)
ARTJ_ECOLI / P30860 ABC transporter arginine-binding protein 1 from Escherichia coli (strain K12)
TC 3.A.1.3.3 / P30860 ArtJ aka B0860, component of Arginine porter from Escherichia coli
GB|BAA35574.1 arginine ABC transporter, periplasmic arginine-binding protein ArtJ from Escherichia coli K12
PFams: SBP_bac_3
Heteromeric, 243 amino acids: PaperBLAST, CDD, CharProtDB::CH_002541
41% identical to

ARTI_ECOLI / P30859 Putative ABC transporter arginine-binding protein 2 from Escherichia coli (strain K12)
TC 3.A.1.3.3 / P30859 ArtI aka B0863, component of Arginine porter from Escherichia coli
PFams: SBP_bac_3
Heteromeric, 243 amino acids: PaperBLAST, CDD, SwissProt::P30859
40% identical to

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for AO353_03055.)

AO356_18700 L-Arginine ABC transporter, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2C3
PFams: SBP_bac_3, Lig_chan-Glu_bd
Heteromeric, 257 amino acids: PaperBLAST, CDD, reanno::pseudo5_N2C3_1:AO356_18700
97% identical to

Pf6N2E2_5660 L-Arginine ABC transporter, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E2
PFams: SBP_bac_3, Lig_chan-Glu_bd
Heteromeric, 257 amino acids: PaperBLAST, CDD, reanno::pseudo6_N2E2:Pf6N2E2_5660
97% identical to

PS417_21745 ABC transporter for L-Arginine, substrate-binding component from Pseudomonas simiae WCS417
PFams: SBP_bac_3
Heteromeric, 261 amino acids: PaperBLAST, CDD, reanno::WCS417:GFF4245
86% identical to

TC 3.A.1.3.11 / O50181 AotJ aka PA0888, component of Arginine/ornithine (but not lysine) porter from Pseudomonas aeruginosa
PFams: SBP_bac_3, Lig_chan-Glu_bd
Heteromeric, 259 amino acids: PaperBLAST, CDD, TCDB::O50181
72% identical to