GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gcdG (succinyl-CoA:glutarate CoA-transferase) in L-citrulline catabolism

Or see other characterized proteins similar to gcdG

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Or cluster curated proteins matching a keyword

Definition of gcdG

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 406-445 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

SUCHY_HUMAN / Q9HAC7 Succinate--hydroxymethylglutarate CoA-transferase; Dermal papilla-derived protein 13; SuccinylCoA:glutarate-CoA transferase; EC 2.8.3.13 from Homo sapiens (Human)
Q9HAC7 succinate-hydroxymethylglutarate CoA-transferase (EC 2.8.3.13) from Homo sapiens
Q9HAC7 succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Homo sapiens
PFams: CoA_transf_3
445 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_10845 succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens FW300-N2C3
PFams: CoA_transf_3
406 amino acids: PaperBLAST, CDD, Compare to cluster