GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for orr (ornithine racemase) in L-citrulline catabolism

Or see other characterized proteins similar to orr

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Or cluster curated proteins matching a keyword

Definition of orr

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 353-367 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

ORR_ACESD / C1FW08 Ornithine racemase; OR; EC 5.1.1.12 from Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIMB 10654) (Clostridium sticklandii)
C1FW08 ornithine racemase monomer (EC 5.1.1.12) from Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIMB 10654)
PFams: Ala_racemase_N
353 amino acids: PaperBLAST, CDD, Compare to cluster

Q8ZNC6 ornithine racemase (EC 5.1.1.12) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: Ala_racemase_N
367 amino acids: PaperBLAST, CDD, Compare to cluster

LYSRA_THEMA / Q9X1T3 Lysine racemase; Lys racemase; Ornithine racemase; EC 5.1.1.5; EC 5.1.1.12 from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: Ala_racemase_N
354 amino acids: PaperBLAST, CDD, Compare to cluster

Q2FW73 ornithine racemase (EC 5.1.1.12) from Staphylococcus aureus (strain NCTC 8325)
PFams: Ala_racemase_N
356 amino acids: PaperBLAST, CDD, Compare to cluster