GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to ortA

Finding the characterized proteins for ortA (2-amino-4-oxopentanoate thiolase, alpha subunit) in L-citrulline catabolism

Or see clustering for step ortA

Or see all steps for L-citrulline catabolism

Or cluster curated proteins matching a keyword

Definition of ortA

Fetched 2 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Software error:

Error running
../bin/usearch -ublast /tmp/cluratedClusters.2111856.faa -db ../tmp/path.carbon/curated.faa.udb -evalue 0.001 -blast6out /tmp/cluratedClusters.2111856.close -threads 8 -quiet -id 0.4 -query_cov 0.7
-- Inappropriate ioctl for device at /opt/apache/vhosts/genomics.lbl.gov/papers/Genomics/cgi/curatedClusters.cgi line 449.

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