GapMind for catabolism of small carbon sources


Other Characterized Proteins Similar to rocA

Finding the characterized proteins for rocA (1-pyrroline-5-carboxylate dehydrogenase) in L-citrulline catabolism

Or see clustering for step rocA

Or see all steps for L-citrulline catabolism

Or cluster curated proteins matching a keyword

Definition of rocA

Fetched 23 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 1 other characterized sequences. (Found 24 hits including self hits.)

There are also 1 HMM-only high-coverage hits.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for rocA.)

ALDH_LINUS / Q40255 Probable aldehyde dehydrogenase; Flax-inducible sequence 1; EC from Linum usitatissimum (Flax) (Linum humile)
PFams: Aldedh
551 amino acids: PaperBLAST, CDD, SwissProt::Q40255
80% identical to

AL121_ARATH / Q8VZC3 Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial; AtP5CDH; P5C dehydrogenase; Aldehyde dehydrogenase family 12 member A1; L-glutamate gamma-semialdehyde dehydrogenase; EC from Arabidopsis thaliana (Mouse-ear cress)
Q8VZC3 L-glutamate gamma-semialdehyde dehydrogenase (EC from Arabidopsis thaliana
PFams: Aldedh
556 amino acids: PaperBLAST, CDD

HMM-only sequences

(Since these sequences' annotations are outside the definition for rocA, HMM hits that are over 40% similar to these sequences will be scored as moderate confidence.)

CH_122352 delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC from Emericella nidulans
PFams: Aldedh
572 amino acids: PaperBLAST, CDD