GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to nupA

Finding the characterized proteins for nupA (deoxyinosine ABC transporter, ATPase component) in 2'-deoxyinosine catabolism

Or see clustering for step nupA

Or see all steps for 2'-deoxyinosine catabolism

Or cluster curated proteins matching a keyword

Definition of nupA

Fetched 2 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 2 other characterized sequences. (Found 4 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for nupA.)

TC 3.A.1.2.10 / O83341 Ribose/galactose ABC transporter, ATP-binding protein aka RbsA-2, component of The purine nucleoside permease (probably transports guanosine, adenosine, 2'-deoxyguanosine, inosine and xanthosine with decreasing affinity in this order) from Treponema pallidum
PFams: ABC_tran, ABC_tran
Heteromeric, 533 amino acids: PaperBLAST, CDD, TCDB::O83341
47% identical to

TC 3.A.1.2.17 / A2RKA7 Purine/cytidine ABC transporter ATP-binding protein, component of General nucleoside uptake porter, NupABC/BmpA (transports all common nucleosides as well as 5-fluorocytidine, inosine, deoxyuridine and xanthosine) (Martinussen et al., 2010) (Most similar to 3.A.1.2.12). NupA is 506aas with two ABC (C) domains. NupB has 8 predicted TMSs, NupC has 9 or 10 predicted TMSs in a 4 + 1 (or 2) + 4 arrangement from Lactococcus lactis subsp. cremoris (strain MG1363)
PFams: ABC_tran, ABC_tran
Heteromeric, 506 amino acids: PaperBLAST, CDD

TSGDD_HALVD / D4GPW3 Glucose import ATP-binding protein TsgD13; EC 7.5.2.- from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii)
PFams: ABC_tran, ABC_tran
550 amino acids: PaperBLAST, CDD, SwissProt::D4GPW3
44% identical to

TC 3.A.1.2.12 / Q8DU37 RnsB, component of The (deoxy)ribonucleoside permease; probably takes up all deoxy- and ribonucleosides (cytidine, uridine, adenosine and toxic analogues, fluorocytidine and fluorouridine tested), but not ribose or nucleobases from Streptococcus mutans
PFams: ABC_tran, ABC_tran
Heteromeric, 510 amino acids: PaperBLAST, CDD