Other Characterized Proteins Similar to drdehyd-alpha

Finding the characterized proteins for drdehyd-alpha (2-deoxy-D-ribose dehydrogenase, alpha subunit) in 2-deoxy-D-ribose catabolism

Or see clustering for step drdehyd-alpha

Or see all steps for 2-deoxy-D-ribose catabolism

Or cluster curated proteins matching a keyword

Definition of drdehyd-alpha

• Curated proteins matching deoxy%ribose dehydrogenase%alpha
• Ignore hits to items matching vanillin dehydrogenase when looking for 'other' hits
• Comment: This three-component periplasmic (probably) dehydrogenase seems to be non-specific, but it is the only known way to convert deoxyribose to deoxyribonate. (Oxidative damage of DNA and archaeal glycolysis may also be sources of deoxyribonate.) It probably forms 1,5-lactone, but since that is uncertain, the lactonase is not included in this pathway definition

Fetched 1 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 6 other characterized sequences. (Found 7 hits including self hits.)

Removing ignored items reduces this to 5 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for drdehyd-alpha.)

Q51697 isoquinoline 1-oxidoreductase subunit α (EC 1.3.99.16) from Brevundimonas diminuta
PFams: Fer2, Fer2_3, Fer2_2
Heteromeric, 152 amino acids: PaperBLAST, CDD, metacyc::MONOMER-20838
48% identical to

PS417_10890 Deoxyribose 1-dehydrogenase, alpha subunit from Pseudomonas simiae WCS417
A0A1N7UJP4 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae
PFams: Fer2, Fer2_2
Heteromeric, 151 amino acids: PaperBLAST, CDD

Q88FX9 nicotinate hydroxylase small subunit (EC 1.17.2.1) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
NICA_PSEPK / Q88FX9 Nicotinate dehydrogenase subunit A; Nicotinate degradation protein A; Nicotinate dehydrogenase small subunit; EC 1.17.2.1 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Q88FX9 nicotinate dehydrogenase (cytochrome) (EC 1.17.2.1) from Pseudomonas putida
PFams: Fer2, Fer2_2
Heteromeric, 157 amino acids: PaperBLAST, CDD, BRENDA::Q88FX9
47% identical to

PS417_10890 Deoxyribose 1-dehydrogenase, alpha subunit from Pseudomonas simiae WCS417
A0A1N7UJP4 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae
PFams: Fer2, Fer2_2
Heteromeric, 151 amino acids: PaperBLAST, CDD

A0A0X8IUP5 nicotine dehydrogenase β subunit (EC 1.5.99.4) from Rhizobium radiobacter
PFams: Fer2, Fer2_2
Heteromeric, 155 amino acids: PaperBLAST, CDD, metacyc::MONOMER-19749
47% identical to

PS417_10890 Deoxyribose 1-dehydrogenase, alpha subunit from Pseudomonas simiae WCS417
A0A1N7UJP4 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae
PFams: Fer2, Fer2_2
Heteromeric, 151 amino acids: PaperBLAST, CDD

Q5P3F2 4-hydroxybenzoyl-CoA reductase, γ subunit (EC 1.3.7.9) from Aromatoleum aromaticum (strain EbN1)
PFams: Fer2, Fer2_2
Heteromeric, 158 amino acids: PaperBLAST, CDD, metacyc::MONOMER-14378
43% identical to

PS417_10890 Deoxyribose 1-dehydrogenase, alpha subunit from Pseudomonas simiae WCS417
A0A1N7UJP4 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae
PFams: Fer2, Fer2_2
Heteromeric, 151 amino acids: PaperBLAST, CDD

Q46509 aldehyde dehydrogenase (FAD-independent) (EC 1.2.99.7) from Desulfovibrio gigas
PFams: Fer2, Fer2_2, Ald_Xan_dh_C, Ald_Xan_dh_C2
907 amino acids: PaperBLAST, CDD, BRENDA::Q46509
40% identical to

PS417_10890 Deoxyribose 1-dehydrogenase, alpha subunit from Pseudomonas simiae WCS417
A0A1N7UJP4 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae
PFams: Fer2, Fer2_2
Heteromeric, 151 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for drdehyd-alpha.)

PP_3621 vanillin dehydrogenase, iorA-like component from Pseudomonas putida KT2440
PFams: Fer2, Fer2_2
Heteromeric, 151 amino acids: PaperBLAST, CDD, reanno::Putida:PP_3621
91% identical to

PS417_10890 Deoxyribose 1-dehydrogenase, alpha subunit from Pseudomonas simiae WCS417
A0A1N7UJP4 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae
PFams: Fer2, Fer2_2
Heteromeric, 151 amino acids: PaperBLAST, CDD