GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to drdehyd-cytc

Finding the characterized proteins for drdehyd-cytc (2-deoxyribose-D dehydrogenase, cytochrome c component) in 2-deoxy-D-ribose catabolism

Or see clustering for step drdehyd-cytc

Or see all steps for 2-deoxy-D-ribose catabolism

Or cluster curated proteins matching a keyword

Definition of drdehyd-cytc

Fetched 1 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 9 other characterized sequences. (Found 10 hits including self hits.)

Removing ignored items reduces this to 8 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for drdehyd-cytc.)

Q4KKM6 D-gluconate dehydrogenase cytochrome c subunit (EC 1.1.99.3) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
PFams: Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 434 amino acids: PaperBLAST, CDD, metacyc::MONOMER-12746
50% identical to

PS417_10880 cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae WCS417
PFams: Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 447 amino acids: PaperBLAST, CDD

D2SZY5 alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Acetobacter pasteurianus
PFams: Cytochrom_C, Cytochrom_C, Cytochrome_CBB3
472 amino acids: PaperBLAST, CDD, BRENDA::D2SZY5
46% identical to

PS417_10880 cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae WCS417
PFams: Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 447 amino acids: PaperBLAST, CDD

ADHB_GLUPO / P0A388 Alcohol dehydrogenase (quinone), cytochrome c subunit; ADH; Alcohol dehydrogenase (quinone), subunit II; Cytochrome c-553; Cytochrome c553; Ethanol:Q2 reductase; G3-ADH subunit II; Quinohemoprotein-cytochrome c complex; Ubiquinol oxidase; EC 1.1.5.5 from Gluconacetobacter polyoxogenes (Acetobacter polyoxogenes)
PFams: Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
468 amino acids: PaperBLAST, CDD, SwissProt::P0A388
48% identical to

PS417_10880 cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae WCS417
PFams: Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 447 amino acids: PaperBLAST, CDD

C7G3B8 alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Acetobacter pasteurianus
PFams: Cytochrom_C, Cytochrom_C, Cytochrome_CBB3
472 amino acids: PaperBLAST, CDD, BRENDA::C7G3B8
45% identical to

PS417_10880 cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae WCS417
PFams: Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 447 amino acids: PaperBLAST, CDD

C9K502 alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Acetobacter pasteurianus
PFams: Cytochrom_C, Cytochrom_C, Cytochrome_CBB3
472 amino acids: PaperBLAST, CDD, BRENDA::C9K502
45% identical to

PS417_10880 cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae WCS417
PFams: Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 447 amino acids: PaperBLAST, CDD

GADH2_PANCY / O34215 Gluconate 2-dehydrogenase cytochrome c subunit; GA 2-DH cytochrome c subunit; GADH cytochrome c subunit; EC 1.1.99.3 from Pantoea cypripedii (Pectobacterium cypripedii) (Erwinia cypripedii)
O34215 gluconate 2-dehydrogenase cytochrome c subunit (EC 1.1.99.3) from Pantoea cypripedii
PFams: Cytochrome_CBB3, Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 441 amino acids: PaperBLAST, CDD, SwissProt::O34215
49% identical to

PS417_10880 cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae WCS417
PFams: Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 447 amino acids: PaperBLAST, CDD

ADHB_GLUOX / Q47945 Alcohol dehydrogenase (quinone), cytochrome c subunit; ADH; Alcohol dehydrogenase (quinone), subunit II; Cytochrome c-553; Cytochrome c553; Ethanol:Q2 reductase; G3-ADH subunit II; Quinohemoprotein-cytochrome c complex; Ubiquinol oxidase; EC 1.1.5.5 from Gluconobacter oxydans (strain 621H) (Gluconobacter suboxydans)
Q47945 alcohol dehydrogenase cytochrome c subunit (EC 1.1.5.5) from Gluconobacter oxydans (strain 621H)
PFams: Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 478 amino acids: PaperBLAST, CDD, SwissProt::Q47945
47% identical to

PS417_10880 cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae WCS417
PFams: Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 447 amino acids: PaperBLAST, CDD

Q5FRK5 gluconate 2-dehydrogenase (EC 1.1.1.215) from Gluconobacter oxydans
PFams: Cytochrom_C, Cytochrom_C, Cytochrome_CBB3
437 amino acids: PaperBLAST, CDD, BRENDA::Q5FRK5
43% identical to

PS417_10880 cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae WCS417
PFams: Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 447 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for drdehyd-cytc.)

PP_3623 vanillin dehydrogenase, cytochrome c component from Pseudomonas putida KT2440
PFams: Cytochrom_C, Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 447 amino acids: PaperBLAST, CDD, reanno::Putida:PP_3623
84% identical to

PS417_10880 cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae WCS417
PFams: Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 447 amino acids: PaperBLAST, CDD