GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for ketodeoxyribonate-cleavage (2-deoxy-3-keto-D-ribonate cleavage enzyme) in 2-deoxy-D-ribose catabolism

Or see other characterized proteins similar to ketodeoxyribonate-cleavage

Or see all steps for 2-deoxy-D-ribose catabolism

Or cluster curated proteins matching a keyword

Definition of ketodeoxyribonate-cleavage

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 310-312 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

H281DRAFT_00641 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila 376MFSha3.1
312 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_07250 2-deoxy-3-keto-D-ribonoate cleavage enzyme from Pseudomonas simiae WCS417
310 amino acids: PaperBLAST, CDD, Compare to cluster