GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for 1pfk (1-phosphofructokinase) in D-fructose catabolism

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Definition of 1pfk

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 305-313 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b2168 1-phosphofructokinase (EC 2.7.1.56) from Escherichia coli K-12 substr. MG1655
P0AEW9 1-phosphofructokinase (EC 2.7.1.56) from Escherichia coli (strain K12)
RF|NP_416673 1-phosphofructokinase from Escherichia coli K12
PFams: PfkB
312 amino acids: PaperBLAST, CDD, Compare to cluster

K1PF_HALVD / D4GYE6 1-phosphofructokinase; Fructose 1-phosphate kinase; EC 2.7.1.56 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii)
PFams: PfkB, Phos_pyr_kin
305 amino acids: PaperBLAST, CDD, Compare to cluster

Psest_3354 1-phosphofructokinase (EC 2.7.1.56) from Pseudomonas stutzeri RCH2
PFams: PfkB
312 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_07330 1-phosphofructokinase (EC 2.7.1.56) from Pseudomonas fluorescens FW300-N2C3
PFams: PfkB, Phos_pyr_kin
313 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

FRUK_MYCGE / Q49396 Putative 1-phosphofructokinase; Fructose 1-phosphate kinase; EC 2.7.1.56 from Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
PFams: PfkB, Carb_kinase, Phos_pyr_kin
303 amino acids: PaperBLAST, CDD