GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to fba

Finding the characterized proteins for fba (fructose 1,6-bisphosphate aldolase) in D-fructose catabolism

Or see clustering for step fba

Or see all steps for D-fructose catabolism

Or cluster curated proteins matching a keyword

Definition of fba

Fetched 74 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 8 other characterized sequences. (Found 82 hits including self hits.)

Removing ignored items reduces this to 6 close sequences.

There are also 1 HMM-only high-coverage hits.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for fba.)

ADHS_METMP / Q6LZE3 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase; ADH synthase; ADHS; ADTH synthase; EC 2.2.1.10 from Methanococcus maripaludis (strain S2 / LL)
PFams: DeoC
272 amino acids: PaperBLAST, CDD, SwissProt::Q6LZE3
75% identical to

ADHS_METJA / Q57843 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase; ADH synthase; ADHS; ADTH synthase; Transaldolase-like ADHS; EC 2.2.1.10 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Q57843 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase (EC 2.2.1.10) from Methanocaldococcus jannaschii
Q57843 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase monomer (EC 4.1.2.13; EC 2.2.1.10) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
PFams: DeoC
273 amino acids: PaperBLAST, CDD

GATY_KLEOX / Q8VS16 D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Klebsiella oxytoca
Q8VS16 tagatose-bisphosphate aldolase (EC 4.1.2.40) from Klebsiella oxytoca
PFams: F_bP_aldolase
284 amino acids: PaperBLAST, CDD, SwissProt::Q8VS16
43% identical to

I3EBM6 fructose-bisphosphate aldolase (EC 4.1.2.13) from Bacillus methanolicus
PFams: F_bP_aldolase
285 amino acids: PaperBLAST, CDD

GATY_ECOLX / P0C8J7 D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
PFams: F_bP_aldolase
284 amino acids: PaperBLAST, CDD, SwissProt::P0C8J7
42% identical to

ALF_BACSU / P13243 Probable fructose-bisphosphate aldolase; FBP aldolase; FBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 from Bacillus subtilis (strain 168)
PFams: F_bP_aldolase
285 amino acids: PaperBLAST, CDD

b2096 tagatose-1,6-bisphosphate aldolase 2 subunit GatY (EC 4.1.2.40) from Escherichia coli K-12 substr. MG1655
GATY_ECOLI / P0C8J6 D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli (strain K12)
P0C8J6 tagatose-1,6-bisphosphate aldolase 2 subunit GatY (EC 4.1.2.40) from Escherichia coli (strain K12)
PFams: F_bP_aldolase
Heteromeric, 284 amino acids: PaperBLAST, CDD, SwissProt::P0C8J6
42% identical to

Q5HE75 fructose-bisphosphate aldolase (EC 4.1.2.13) from Staphylococcus aureus
PFams: F_bP_aldolase
286 amino acids: PaperBLAST, CDD

KBAY_ECOLX / Q9KIP8 D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
PFams: F_bP_aldolase
286 amino acids: PaperBLAST, CDD, SwissProt::Q9KIP8
41% identical to

I3EBM6 fructose-bisphosphate aldolase (EC 4.1.2.13) from Bacillus methanolicus
PFams: F_bP_aldolase
285 amino acids: PaperBLAST, CDD

b3137 tagatose-1,6-bisphosphate aldolase 1 subunit KbaY (EC 4.1.2.40) from Escherichia coli K-12 substr. MG1655
KBAY_ECOLI / P0AB74 D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli (strain K12)
P0AB76 D-tagatose-1,6-bisphosphate aldolase subunit KbaY (EC 4.1.2.40) from Escherichia coli O157:H7
P0AB74 tagatose-1,6-bisphosphate aldolase 1 subunit KbaY (EC 4.1.2.40) from Escherichia coli (strain K12)
RF|NP_417606 tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli K12
PFams: F_bP_aldolase
Heteromeric, 286 amino acids: PaperBLAST, CDD, CharProtDB::CH_024465
41% identical to

I3EBM6 fructose-bisphosphate aldolase (EC 4.1.2.13) from Bacillus methanolicus
PFams: F_bP_aldolase
285 amino acids: PaperBLAST, CDD

HMM-only sequences

(Since these sequences' annotations are outside the definition for fba, HMM hits that are over 40% similar to these sequences will be scored as moderate confidence.)

IOLJ_BACSU / P42420 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase; DKGP aldolase; EC 4.1.2.29 from Bacillus subtilis (strain 168)
P42420 2-deoxy-5-keto-D-gluconate 6-phosphate aldolase (EC 4.1.2.29) from Bacillus subtilis (strain 168)
PFams: F_bP_aldolase
290 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for fba.)

Q5SJM8 fructose-bisphosphatase (EC 3.1.3.11) from Thermus thermophilus
PFams: FBPase_3
363 amino acids: PaperBLAST, CDD, BRENDA::Q5SJM8
99% identical to

FBPAP_THET2 / Q72K02 Fructose-1,6-bisphosphate aldolase/phosphatase; FBP A/P; FBP aldolase/phosphatase; EC 3.1.3.11; EC 4.1.2.13 from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: FBPase_3
363 amino acids: PaperBLAST, CDD

CH_091808 fructose-1,6-bisphosphate aldolase; EC 5.3.1.9 from Entamoeba histolytica HM-1:IMSS
PFams: F_bP_aldolase
330 amino acids: PaperBLAST, CDD, CharProtDB::CH_091808
45% identical to

O97447 fructose-bisphosphate aldolase (EC 4.1.2.13) from Giardia intestinalis
PFams: F_bP_aldolase
323 amino acids: PaperBLAST, CDD