Finding the characterized proteins for HSERO_RS05255 (ABC transporter for L-fucose, permease component) in L-fucose catabolism
Or see clustering for step HSERO_RS05255
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Definition of HSERO_RS05255
Fetched 1 sequences
Running ublast to find other characterized proteins with 40% identity and 70% coverage
Found hits to 5 other characterized sequences. (Found 5 hits including self hits.)
(Sequences that are similar to these will not be high-confidence candidates for HSERO_RS05255.)
b3750 ribose ABC transporter membrane subunit from Escherichia coli K-12 substr. MG1655
P0AGI1 ribose ABC transporter membrane subunit from Escherichia coli (strain K12)
RBSC_ECOLI / P0AGI1 Ribose import permease protein RbsC from Escherichia coli (strain K12)
TC 3.A.1.2.1 / P0AGI1 Ribose transport system permease protein RbsC aka B3750, component of Ribose porter from Escherichia coli
PFams: BPD_transp_2
Heteromeric, 321 amino acids: PaperBLAST, CDD, SwissProt::P0AGI1
42% identical to
D8J112 ABC-type sugar transport system, permease component protein
347 amino acids: PaperBLAST, CDD
TC 3.A.1.2.13 / A6VKS9 RbsC, component of The probable autoinducer-2 (AI-2;, a furanosyl borate diester: 3aS,6S,6aR)-2,2,6,6a-tetrahydroxy-3a-methyltetrahydrofuro[3,2-d][1,3,2]dioxaborolan-2-uide) uptake porter (Shao et al., 2007) (50-70% identical to RbsABC of E. coli; TC# 3.A.1.2.1) from Actinobacillus succinogenes (strain ATCC 55618 / 130Z)
PFams: BPD_transp_2
Heteromeric, 322 amino acids: PaperBLAST, CDD, TCDB::A6VKS9
42% identical to
D8J112 ABC-type sugar transport system, permease component protein
347 amino acids: PaperBLAST, CDD
TC 3.A.1.2.18 / Q9WXW7 ABC-type transporter, integral membrane subunit, component of Xylose porter (Nanavati et al. 2006). Regulated by xylose-responsive regulator XylR from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: BPD_transp_2
Heteromeric, 317 amino acids: PaperBLAST, CDD, TCDB::Q9WXW7
40% identical to
D8J112 ABC-type sugar transport system, permease component protein
347 amino acids: PaperBLAST, CDD
TC 3.A.1.2.19 / Q9X050 ABC-type transporter, integral membrane subunit, component of D-ribose porter (Nanavati et al., 2006). Induced by ribose from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: BPD_transp_2
Heteromeric, 331 amino acids: PaperBLAST, CDD, TCDB::Q9X050
40% identical to
D8J112 ABC-type sugar transport system, permease component protein
347 amino acids: PaperBLAST, CDD
TC 3.A.1.2.16 / Q1M4Q8 Erythritol permease, component of ABC transporter, component of The erythritol uptake permease, EryEFG (Yost et al., 2006) (probably orthologous to 3.A.1.2.11) from Rhizobium leguminosarum bv. viciae (strain 3841)
PFams: BPD_transp_2
Heteromeric, 350 amino acids: PaperBLAST, CDD, TCDB::Q1M4Q8
40% identical to
D8J112 ABC-type sugar transport system, permease component protein
347 amino acids: PaperBLAST, CDD