GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for fdh (L-fucose 1-dehydrogenase) in L-fucose catabolism

Or see other characterized proteins similar to fdh

Or see all steps for L-fucose catabolism

Or cluster curated proteins matching a keyword

Definition of fdh

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 329-346 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

FCDH_PSESP / Q52472 D-threo-aldose 1-dehydrogenase; L-fucose dehydrogenase; EC from Pseudomonas sp.
PFams: Aldo_ket_red
329 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS34225 L-fucose dehydrogenase (EC from Burkholderia phytofirmans PsJN
PFams: Aldo_ket_red
346 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/3 heteromeric)

Q97YM2 D-arabinose 1-dehydrogenase subunit from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Q97YM2 D-threo-aldose 1-dehydrogenase (EC from Saccharolobus solfataricus
PFams: ADH_N, ADH_zinc_N, ADH_zinc_N_2
349 amino acids: PaperBLAST, CDD

A0A2E7P8M8 Short-chain dehydrogenase
258 amino acids: PaperBLAST, CDD

SM_b21109 L-fucose dehydrogenase (EC from Sinorhizobium meliloti 1021
360 amino acids: PaperBLAST, CDD