GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for fucA (L-fuculose-phosphate aldolase FucA) in L-fucose catabolism

Or see other characterized proteins similar to fucA

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Definition of fucA

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by cluster

Escherichia coli

b2800 L-fuculose-phosphate aldolase (EC 4.1.2.17) from Escherichia coli K-12 substr. MG1655
FUCA_ECOLI / P0AB87 L-fuculose phosphate aldolase; D-ribulose-phosphate aldolase; L-fuculose-1-phosphate aldolase; EC 4.1.2.17 from Escherichia coli (strain K12)
P0AB87 L-fuculose-phosphate aldolase (EC 4.1.2.17) from Escherichia coli
P0AB87 L-fuculose-phosphate aldolase (EC 4.1.2.17) from Escherichia coli (strain K12)
RF|NP_417280 L-fuculose-1-phosphate aldolase from Escherichia coli K12
PFams: Aldolase_II
215 amino acids: PaperBLAST, CDD (Cluster 1)

Klebsiella michiganensis

BWI76_RS22915 L-fuculose phosphate aldolase (EC 4.1.2.17) from Klebsiella michiganensis M5al
PFams: Aldolase_II
215 amino acids: PaperBLAST, CDD (Cluster 1)

Methanocaldococcus jannaschii

FUCA_METJA / Q58813 L-fuculose phosphate aldolase; L-fuculose-1-phosphate aldolase; EC 4.1.2.17 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Q58813 L-fuculose-phosphate aldolase (EC 4.1.2.17) from Methanocaldococcus jannaschii
Q58813 fuculose-1-phosphate aldolase subunit (EC 4.1.2.17) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
PFams: Aldolase_II
181 amino acids: PaperBLAST, CDD (Singleton 1)

Organism unknown

G8JZT1 L-fuculose-1-phosphate aldolase
212 amino acids: PaperBLAST, CDD (Singleton 2)

Thermus thermophilus

Q5SHB9 L-fuculose-phosphate aldolase (EC 4.1.2.17) from Thermus thermophilus
PFams: Aldolase_II
200 amino acids: PaperBLAST, CDD (Cluster 1)