GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for fucD (L-fuconate dehydratase) in L-fucose catabolism

Or see other characterized proteins similar to fucD

Or see all steps for L-fucose catabolism

Or cluster curated proteins matching a keyword

Definition of fucD

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 425-452 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

G3Y683 L-fuconate dehydratase (EC from Aspergillus niger
452 amino acids: PaperBLAST, CDD, Compare to cluster

ENOF1_HUMAN / Q7L5Y1 Mitochondrial enolase superfamily member 1; Antisense RNA to thymidylate synthase; rTS; L-fuconate dehydratase; EC from Homo sapiens (Human)
443 amino acids: PaperBLAST, CDD, Compare to cluster

FUCD_XANCP / Q8P3K2 L-fuconate dehydratase; FucD; EC from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
441 amino acids: PaperBLAST, CDD, Compare to cluster

D8J108 L-fuconate dehydratase; EC=
425 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

BPHYT_RS34230 L-fuconate dehydratase; L-rhamnonate dehydratase (EC; EC from Burkholderia phytofirmans PsJN
PFams: GD_AH_C
431 amino acids: PaperBLAST, CDD