GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for fucDH (2-keto-3-deoxy-L-fuconate 4-dehydrogenase) in L-fucose catabolism

Or see other characterized proteins similar to fucDH

Or see all steps for L-fucose catabolism

Or cluster curated proteins matching a keyword

Definition of fucDH

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 247-300 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

FUCDH_XANCP / Q8P3K4 2-keto-3-deoxy-L-fuconate dehydrogenase; EC 1.1.1.- from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
PFams: adh_short, adh_short_C2
300 amino acids: PaperBLAST, CDD, Compare to cluster

A0A4P7ABK7 SDR family oxidoreductase
254 amino acids: PaperBLAST, CDD, Compare to cluster

B2T9V3 Short-chain dehydrogenase/reductase SDR
247 amino acids: PaperBLAST, CDD, Compare to cluster

D8IS13 Short-chain alcohol dehydrogenase protein
254 amino acids: PaperBLAST, CDD, Compare to cluster