GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for fucU (L-fucose mutarotase FucU) in L-fucose catabolism

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Definition of fucU

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 109-130 amino acids (not heteromeric)

FUCM_XANCP / Q8P3K1 L-fucose mutarotase; Fucose 1-epimerase; Type-2 mutarotase; EC 5.1.3.29 from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
PFams: rhaM
125 amino acids: PaperBLAST, CDD, Compare to cluster

Q8A896 Rhamnose mutarotase
130 amino acids: PaperBLAST, CDD, Compare to cluster

SM_b21108 L-fucose mutarotase (EC 5.1.3.29) from Sinorhizobium meliloti 1021
PFams: rhaM
109 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 140-154 amino acids (not heteromeric)

b2804 L-fucose mutarotase (EC 5.1.3.29) from Escherichia coli K-12 substr. MG1655
P0AEN8 L-fucose mutarotase (EC 5.1.3.29) from Escherichia coli (strain K12)
FUCM_ECOLI / P0AEN8 L-fucose mutarotase; D-ribose pyranase; Fucose 1-epimerase; Type-2 mutarotase; EC 5.1.3.29; EC 5.4.99.62 from Escherichia coli (strain K12)
P0AEN8 L-fucose mutarotase (EC 5.1.3.29); D-ribose pyranase (EC 5.4.99.62) from Escherichia coli
RF|NP_417284 L-fucose mutarotase; EC 5.1.3.n2 from Escherichia coli K12
PFams: RbsD_FucU
140 amino acids: PaperBLAST, CDD, Compare to cluster

FUCM_HUMAN / A2VDF0 Fucose mutarotase; EC 5.1.3.29 from Homo sapiens (Human)
A2VDF0 L-fucose mutarotase (EC 5.1.3.29) from Homo sapiens
PFams: RbsD_FucU
154 amino acids: PaperBLAST, CDD, Compare to cluster

FUCM_MOUSE / Q8R2K1 Fucose mutarotase; EC 5.1.3.29 from Mus musculus (Mouse)
Q8R2K1 L-fucose mutarotase (EC 5.1.3.29); D-ribose pyranase (EC 5.4.99.62) from Mus musculus
PFams: RbsD_FucU
153 amino acids: PaperBLAST, CDD, Compare to cluster