GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for Dshi_1194 (TRAP transporter for succinate, fumarate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components) in fumarate catabolism

Or see other characterized proteins similar to Dshi_1194

Or see all steps for fumarate catabolism

Or cluster curated proteins matching a keyword

Definition of Dshi_1194

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 729-743 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A8LI82 TRAP transporter
743 amino acids: PaperBLAST, CDD, Compare to cluster

E4PQE4 TRAP transporter, 4TM/12TM fusion protein
729 amino acids: PaperBLAST, CDD, Compare to cluster