Other Characterized Proteins Similar to dctM
Finding the characterized proteins for dctM (fumarate TRAP transporter, large permease component DctM) in fumarate catabolism
Or see clustering for step dctM
Or see all steps for fumarate catabolism
Or cluster curated proteins matching a keyword
Definition of dctM
- Curated sequence O07838: C4-dicarboxylate TRAP transporter large permease protein DctM. DctM, component of Tripartite dicarboxylate:H+ symporter (substrates include: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate and mesaconate)
- Curated sequence 5208943: dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component
- Curated sequence Q9HU16: C4-dicarboxylate TRAP transporter large permease protein DctM
- UniProt sequence I7DRS6: SubName: Full=TRAP transporter, subunit DctM {ECO:0000313|EMBL:AFO91751.1};
- Ignore hits to 6938090 when looking for 'other' hits (alpha-ketoglutarate TRAP transporter, large permease component)
- Comment: Three-part TRAP transporter DctMPQ In Phaeobacter inhibens, the system is important for fumarate utilization: PGA1_c20660 = dctM = I7DRS6, PGA1_c20680 = dctP = I7END8, PGA1_c20670 = dctQ = I7EY26. A closely related system in SB2B transports another dicarboxylate, 2-oxoglutarate, so its components are marked ignore
Fetched 4 sequences
Running ublast to find other characterized proteins with 40% identity and 70% coverage
Found hits to 1 other characterized sequences. (Found 4 hits including self hits.)
Removing ignored items reduces this to 0 close sequences.
Close but ignored sequences
(Sequences that are similar to these will still be high-confidence candidates for dctM.)
Sama_2211 alpha-ketoglutarate TRAP transporter, large permease component from Shewanella amazonensis SB2B
PFams: DctM
Heteromeric, 466 amino acids: PaperBLAST, CDD, reanno::SB2B:6938090
89% identical to
Shew_1444 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component from Shewanella loihica PV-4
PFams: DctM
Heteromeric, 465 amino acids: PaperBLAST, CDD